Gene annotation
Transcriptome id Sobic.001G017200.1
Synonym Sb01g001670
Functional annotation protein transporter, putative, expressed
UniProt C5WT09
Pfam PF03839
Panther DB PTHR12443:SF9 PTHR12443
NCBI CDD KOG2927; Membrane component of ER protein translocation complex
KEGG Orthology K12275; translocation protein SEC62
Gene Ontology GO:0008565; obsolete protein transporter activity GO:0015031protein transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G20920 : translocation protein-related
RAP-DB (Rice) LOC_Os02g23890.1 : protein transporter, putative, expressed
MaizeGDB (Corn) Zm00025a016351 , Zm00025a008980
Brachypodium KQJ94622 , PNT66444
Barley HORVU6Hr1G048550.2 , HORVU6Hr1G048550.1
Wheat TraesCS6B02G229300 , TraesCS6D02G185600 , TraesCS6D02G185600 , TraesCS6A02G203000 , TraesCS6A02G203000
Populus -


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cDNA sequences
Sobic.001G017200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
3 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
4 Sobic.007G158900 expressed protein -
5 Sobic.004G042900 VIL2 protein, putative, expressed -
6 Sobic.009G059400 expressed protein -
7 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
8 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
9 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
10 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
11 Sobic.001G305900 GTP binding protein, putative, expressed -
12 Sobic.003G381600 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
13 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
14 Sobic.008G111800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
15 Sobic.006G224300 APO, putative, expressed -
16 Sobic.002G056900 targeting protein for Xklp2, putative, expressed -
17 Sobic.001G497600 PPR repeat domain containing protein, putative, expressed -
18 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
19 Sobic.009G186700 TraB family protein, putative, expressed -
20 Sobic.001G050500 galactosyltransferase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G017200 Sobic001G017200 Sobic006G144000 Sobic006G144000 Sobic001G017200--Sobic006G144000 Sobic004G180900 Sobic004G180900 Sobic001G017200--Sobic004G180900 Sobic009G017200 Sobic009G017200 Sobic001G017200--Sobic009G017200 Sobic007G158900 Sobic007G158900 Sobic001G017200--Sobic007G158900 Sobic004G042900 Sobic004G042900 Sobic001G017200--Sobic004G042900 Sobic009G059400 Sobic009G059400 Sobic001G017200--Sobic009G059400 Sobic007G192400 Sobic007G192400 Sobic001G017200--Sobic007G192400 Sobic004G116600 Sobic004G116600 Sobic001G017200--Sobic004G116600 Sobic007G218600 Sobic007G218600 Sobic001G017200--Sobic007G218600 Sobic006G144000--Sobic001G017200 Sobic006G144000--Sobic009G017200 Sobic006G144000--Sobic009G059400 Sobic010G237650 Sobic010G237650 Sobic006G144000--Sobic010G237650 Sobic006G144000--Sobic004G180900 Sobic006G144000--Sobic004G116600 Sobic006G130200 Sobic006G130200 Sobic006G144000--Sobic006G130200 Sobic004G313300 Sobic004G313300 Sobic006G144000--Sobic004G313300 Sobic001G425000 Sobic001G425000 Sobic006G144000--Sobic001G425000 Sobic004G180900--Sobic009G017200 Sobic007G056500 Sobic007G056500 Sobic004G180900--Sobic007G056500 Sobic004G180900--Sobic001G425000 Sobic004G345400 Sobic004G345400 Sobic004G180900--Sobic004G345400 Sobic006G186400 Sobic006G186400 Sobic004G180900--Sobic006G186400 Sobic008G058800 Sobic008G058800 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic010G077500 Sobic010G077500 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic009G017200--Sobic004G180900 Sobic009G017200--Sobic009G059400 Sobic009G137900 Sobic009G137900 Sobic009G017200--Sobic009G137900 Sobic009G017200--Sobic008G058800 Sobic009G017200--Sobic006G144000 Sobic009G017200--Sobic001G425000 Sobic001G042200 Sobic001G042200 Sobic009G017200--Sobic001G042200 Sobic009G017200--Sobic010G077500 Sobic005G198200 Sobic005G198200 Sobic009G017200--Sobic005G198200 Sobic009G199500 Sobic009G199500 Sobic007G158900--Sobic009G199500 Sobic010G181600 Sobic010G181600 Sobic007G158900--Sobic010G181600 Sobic007G158900--Sobic007G192400 Sobic007G158900--Sobic009G059400 Sobic002G023100 Sobic002G023100 Sobic007G158900--Sobic002G023100 Sobic007G158900--Sobic001G017200 Sobic007G158900--Sobic007G218600 Sobic004G218300 Sobic004G218300 Sobic007G158900--Sobic004G218300 Sobic008G006000 Sobic008G006000 Sobic007G158900--Sobic008G006000 Sobic002G147100 Sobic002G147100 Sobic004G042900--Sobic002G147100 Sobic004G042900--Sobic001G017200 Sobic005G009100 Sobic005G009100 Sobic004G042900--Sobic005G009100 Sobic004G353400 Sobic004G353400 Sobic004G042900--Sobic004G353400 Sobic007G030100 Sobic007G030100 Sobic004G042900--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic004G042900--Sobic003G190200 Sobic004G042900--Sobic006G144000 Sobic002G147200 Sobic002G147200 Sobic004G042900--Sobic002G147200 Sobic004G042900--Sobic004G218300 Sobic009G059400--Sobic009G017200 Sobic009G059400--Sobic005G198200 Sobic009G059400--Sobic007G218600 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300 Sobic003G353700 Sobic003G353700 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic004G259300 Sobic004G259300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400 Sobic001G202266 Sobic001G202266 Sobic004G116600--Sobic001G202266 Sobic001G287800 Sobic001G287800 Sobic004G116600--Sobic001G287800 Sobic004G116600--Sobic004G180900 Sobic004G116600--Sobic006G130200 Sobic005G049000 Sobic005G049000 Sobic004G116600--Sobic005G049000 Sobic004G116600--Sobic006G144000 Sobic004G116600--Sobic004G218300 Sobic004G116600--Sobic001G017200 Sobic004G116600--Sobic007G192400 Sobic009G186700 Sobic009G186700 Sobic007G218600--Sobic009G186700 Sobic001G305900 Sobic001G305900 Sobic007G218600--Sobic001G305900 Sobic007G218600--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic007G218600--Sobic003G255700 Sobic001G280500 Sobic001G280500 Sobic007G218600--Sobic001G280500 Sobic003G308300 Sobic003G308300 Sobic007G218600--Sobic003G308300 Sobic001G114200 Sobic001G114200 Sobic007G218600--Sobic001G114200 Sobic007G218600--Sobic010G181600 Sobic010G160300 Sobic010G160300 Sobic007G218600--Sobic010G160300
Octagon: transcription factors


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