Gene annotation
Transcriptome id Sobic.006G224300.1
Synonym APO4, Sb06g029350
Functional annotation APO, putative, expressed
UniProt C5YGJ4
Pfam PF05634
Panther DB PTHR10388 PTHR10388:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G21740 : Arabidopsis thaliana protein of unknown function (DUF794)
RAP-DB (Rice) LOC_Os04g53612.1 : APO, putative, expressed
MaizeGDB (Corn) Zm00025a009920
Brachypodium KQJ84762
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G021000 exostosin family domain containing protein, expressed -
2 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
3 Sobic.009G059400 expressed protein -
4 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
5 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
6 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
7 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
8 Sobic.002G115500 PHD finger protein, putative, expressed -
9 Sobic.006G203300 GPR89A, putative, expressed -
10 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
11 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
12 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
13 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
14 Sobic.005G114800 protein transport protein, putative, expressed K14007: protein transport protein SEC24
15 Sobic.009G000400 expressed protein -
16 Sobic.003G212900 zinc ion binding protein, putative, expressed -
17 Sobic.009G249700 expressed protein -
18 Sobic.003G393200 expressed protein -
19 Sobic.007G158900 expressed protein -
20 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G224300 Sobic006G224300 Sobic008G021000 Sobic008G021000 Sobic006G224300--Sobic008G021000 Sobic004G084500 Sobic004G084500 Sobic006G224300--Sobic004G084500 Sobic009G059400 Sobic009G059400 Sobic006G224300--Sobic009G059400 Sobic004G345400 Sobic004G345400 Sobic006G224300--Sobic004G345400 Sobic003G394200 Sobic003G394200 Sobic006G224300--Sobic003G394200 Sobic009G040800 Sobic009G040800 Sobic006G224300--Sobic009G040800 Sobic009G017200 Sobic009G017200 Sobic006G224300--Sobic009G017200 Sobic002G115500 Sobic002G115500 Sobic006G224300--Sobic002G115500 Sobic006G203300 Sobic006G203300 Sobic006G224300--Sobic006G203300 Sobic009G166600 Sobic009G166600 Sobic008G021000--Sobic009G166600 Sobic008G021000--Sobic006G224300 Sobic001G005600 Sobic001G005600 Sobic008G021000--Sobic001G005600 Sobic003G212900 Sobic003G212900 Sobic008G021000--Sobic003G212900 Sobic002G313900 Sobic002G313900 Sobic008G021000--Sobic002G313900 Sobic008G021000--Sobic006G203300 Sobic001G135500 Sobic001G135500 Sobic008G021000--Sobic001G135500 Sobic003G150900 Sobic003G150900 Sobic008G021000--Sobic003G150900 Sobic006G224800 Sobic006G224800 Sobic008G021000--Sobic006G224800 Sobic004G084500--Sobic003G394200 Sobic004G060300 Sobic004G060300 Sobic004G084500--Sobic004G060300 Sobic009G122500 Sobic009G122500 Sobic004G084500--Sobic009G122500 Sobic001G193100 Sobic001G193100 Sobic004G084500--Sobic001G193100 Sobic004G084500--Sobic004G345400 Sobic003G398400 Sobic003G398400 Sobic004G084500--Sobic003G398400 Sobic010G074900 Sobic010G074900 Sobic004G084500--Sobic010G074900 Sobic006G128100 Sobic006G128100 Sobic004G084500--Sobic006G128100 Sobic004G084500--Sobic006G224300 Sobic009G059400--Sobic009G017200 Sobic005G198200 Sobic005G198200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic009G059400--Sobic006G224300 Sobic001G042200 Sobic001G042200 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic004G345400--Sobic003G394200 Sobic003G394200--Sobic004G084500 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic009G017200--Sobic004G180900 Sobic009G017200--Sobic009G059400 Sobic009G137900 Sobic009G137900 Sobic009G017200--Sobic009G137900 Sobic008G058800 Sobic008G058800 Sobic009G017200--Sobic008G058800 Sobic009G017200--Sobic006G144000 Sobic001G425000 Sobic001G425000 Sobic009G017200--Sobic001G425000 Sobic009G017200--Sobic001G042200 Sobic009G017200--Sobic010G077500 Sobic009G017200--Sobic005G198200 Sobic002G115500--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic002G115500--Sobic009G000400 Sobic009G260650 Sobic009G260650 Sobic002G115500--Sobic009G260650 Sobic006G281700 Sobic006G281700 Sobic002G115500--Sobic006G281700 Sobic002G115500--Sobic005G040900 Sobic002G115500--Sobic009G122500 Sobic003G240700 Sobic003G240700 Sobic002G115500--Sobic003G240700 Sobic002G115500--Sobic006G224300 Sobic002G115500--Sobic004G345400 Sobic006G203300--Sobic003G394200 Sobic003G346400 Sobic003G346400 Sobic006G203300--Sobic003G346400 Sobic010G169900 Sobic010G169900 Sobic006G203300--Sobic010G169900 Sobic004G236200 Sobic004G236200 Sobic006G203300--Sobic004G236200 Sobic001G445500 Sobic001G445500 Sobic006G203300--Sobic001G445500 Sobic004G254800 Sobic004G254800 Sobic006G203300--Sobic004G254800 Sobic006G203300--Sobic001G308400 Sobic001G474400 Sobic001G474400 Sobic006G203300--Sobic001G474400 Sobic003G036500 Sobic003G036500 Sobic006G203300--Sobic003G036500
Octagon: transcription factors


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