Gene annotation
Transcriptome id Sobic.004G180900.3
Synonym Sb04g023010
Functional annotation PSP domain containing protein, expressed
UniProt C5XUX4
Pfam PF04046
Panther DB PTHR13316
NCBI CDD -
KEGG Orthology K13128; zinc finger CCHC domain-containing protein 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G38600 : Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os06g30020.1 : PSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031630
Brachypodium KQK18431
Barley HORVU4Hr1G000670.11 , HORVU4Hr1G000670.10 , HORVU4Hr1G000670.13 , HORVU4Hr1G000670.12 , HORVU4Hr1G000670.9 , HORVU4Hr1G000670.8 , HORVU4Hr1G000670.5 , HORVU4Hr1G000670.4 , HORVU4Hr1G000670.7 , HORVU4Hr1G000670.6 , HORVU4Hr1G000670.1 , HORVU4Hr1G000670.3 , HORVU4Hr1G000670.2
Wheat TraesCS4D02G000900 , TraesCS4D02G000900 , TraesCS4B02G002400 , TraesCS4B02G002400 , TraesCS4A02G000900
Populus -


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cDNA sequences
Sobic.004G180900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
2 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
3 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
4 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
5 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
6 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
7 Sobic.007G026000 ATBET9, putative, expressed -
8 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
9 Sobic.003G381600 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
10 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
11 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
12 Sobic.001G017200 protein transporter, putative, expressed K12275: translocation protein SEC62
13 Sobic.001G202266 - -
14 Sobic.009G059400 expressed protein -
15 Sobic.002G063900 zinc ion binding protein, putative, expressed -
16 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
17 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
18 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
20 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -


Gene co-expression network
sample Sobic004G180900 Sobic004G180900 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic007G056500 Sobic007G056500 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G345400 Sobic004G345400 Sobic004G180900--Sobic004G345400 Sobic006G186400 Sobic006G186400 Sobic004G180900--Sobic006G186400 Sobic008G058800 Sobic008G058800 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic010G077500 Sobic010G077500 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic009G017200--Sobic004G180900 Sobic009G059400 Sobic009G059400 Sobic009G017200--Sobic009G059400 Sobic009G137900 Sobic009G137900 Sobic009G017200--Sobic009G137900 Sobic009G017200--Sobic008G058800 Sobic006G144000 Sobic006G144000 Sobic009G017200--Sobic006G144000 Sobic009G017200--Sobic001G425000 Sobic001G042200 Sobic001G042200 Sobic009G017200--Sobic001G042200 Sobic009G017200--Sobic010G077500 Sobic005G198200 Sobic005G198200 Sobic009G017200--Sobic005G198200 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic002G197100 Sobic002G197100 Sobic001G425000--Sobic002G197100 Sobic001G176200 Sobic001G176200 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G202266 Sobic001G202266 Sobic001G425000--Sobic001G202266 Sobic001G425000--Sobic006G186400 Sobic001G425000--Sobic004G180900 Sobic004G345400--Sobic001G042200 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G345400--Sobic004G180900 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic008G058800--Sobic001G042200 Sobic009G129600 Sobic009G129600 Sobic008G058800--Sobic009G129600 Sobic006G248500 Sobic006G248500 Sobic008G058800--Sobic006G248500 Sobic003G205501 Sobic003G205501 Sobic008G058800--Sobic003G205501 Sobic008G058800--Sobic010G077500 Sobic002G264200 Sobic002G264200 Sobic008G058800--Sobic002G264200 Sobic008G058800--Sobic007G026000 Sobic008G127400 Sobic008G127400 Sobic008G058800--Sobic008G127400 Sobic008G058800--Sobic004G180900 Sobic007G026000--Sobic008G153000 Sobic007G026000--Sobic006G046700 Sobic005G059100 Sobic005G059100 Sobic007G026000--Sobic005G059100 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic002G153700 Sobic002G153700 Sobic007G026000--Sobic002G153700 Sobic001G206100 Sobic001G206100 Sobic007G026000--Sobic001G206100 Sobic006G013500 Sobic006G013500 Sobic007G026000--Sobic006G013500 Sobic004G031700 Sobic004G031700 Sobic007G026000--Sobic004G031700 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic010G077500--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic010G077500--Sobic009G129600 Sobic003G381600--Sobic004G180900 Sobic001G130200 Sobic001G130200 Sobic003G381600--Sobic001G130200 Sobic003G381600--Sobic009G059400 Sobic003G381600--Sobic009G017200 Sobic006G224300 Sobic006G224300 Sobic003G381600--Sobic006G224300 Sobic001G017200 Sobic001G017200 Sobic003G381600--Sobic001G017200 Sobic007G018200 Sobic007G018200 Sobic003G381600--Sobic007G018200 Sobic004G116600 Sobic004G116600 Sobic003G381600--Sobic004G116600 Sobic001G405300 Sobic001G405300 Sobic003G381600--Sobic001G405300
Octagon: transcription factors


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