Gene annotation
Transcriptome id Sobic.001G202266.1
Synonym -
Functional annotation -
UniProt A0A1Z5S730
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF523
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G48880 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os10g35920.1 : OsFBX389 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006414
Brachypodium KQJ97345
Barley HORVU1Hr1G045640.2 , HORVU1Hr1G045640.3 , HORVU1Hr1G045640.1 , HORVU1Hr1G045640.4 , HORVU1Hr1G045640.5
Wheat TraesCS1D02G165300 , TraesCS1D02G165300 , TraesCS1A02G173500 , TraesCS1A02G173500 , TraesCS1A02G173500 , TraesCS1B02G190900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G073000 expressed protein -
2 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
3 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
5 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
6 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
7 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
8 Sobic.006G130200 expressed protein -
9 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
10 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
11 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
12 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
13 Sobic.010G199800 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
14 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
15 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
16 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
17 Sobic.008G101800 expressed protein -
18 Sobic.001G206100 expressed protein -
19 Sobic.003G336800 expressed protein -
20 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3


Gene co-expression network
sample Sobic001G202266 Sobic001G202266 Sobic008G073000 Sobic008G073000 Sobic001G202266--Sobic008G073000 Sobic001G425000 Sobic001G425000 Sobic001G202266--Sobic001G425000 Sobic002G001600 Sobic002G001600 Sobic001G202266--Sobic002G001600 Sobic004G116600 Sobic004G116600 Sobic001G202266--Sobic004G116600 Sobic005G030300 Sobic005G030300 Sobic001G202266--Sobic005G030300 Sobic006G278200 Sobic006G278200 Sobic001G202266--Sobic006G278200 Sobic003G073000 Sobic003G073000 Sobic001G202266--Sobic003G073000 Sobic006G130200 Sobic006G130200 Sobic001G202266--Sobic006G130200 Sobic002G061400 Sobic002G061400 Sobic001G202266--Sobic002G061400 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic008G073000--Sobic001G202266 Sobic008G073000--Sobic006G278200 Sobic008G165100 Sobic008G165100 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic002G067800 Sobic002G067800 Sobic008G073000--Sobic002G067800 Sobic002G197100 Sobic002G197100 Sobic001G425000--Sobic002G197100 Sobic001G176200 Sobic001G176200 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G425000--Sobic001G202266 Sobic006G186400 Sobic006G186400 Sobic001G425000--Sobic006G186400 Sobic004G180900 Sobic004G180900 Sobic001G425000--Sobic004G180900 Sobic008G116500 Sobic008G116500 Sobic002G001600--Sobic008G116500 Sobic001G543900 Sobic001G543900 Sobic002G001600--Sobic001G543900 Sobic002G313300 Sobic002G313300 Sobic002G001600--Sobic002G313300 Sobic002G001600--Sobic008G101800 Sobic007G185900 Sobic007G185900 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic004G116600--Sobic001G202266 Sobic001G287800 Sobic001G287800 Sobic004G116600--Sobic001G287800 Sobic004G116600--Sobic004G180900 Sobic004G116600--Sobic006G130200 Sobic005G049000 Sobic005G049000 Sobic004G116600--Sobic005G049000 Sobic006G144000 Sobic006G144000 Sobic004G116600--Sobic006G144000 Sobic004G218300 Sobic004G218300 Sobic004G116600--Sobic004G218300 Sobic001G017200 Sobic001G017200 Sobic004G116600--Sobic001G017200 Sobic007G192400 Sobic007G192400 Sobic004G116600--Sobic007G192400 Sobic005G030300--Sobic008G073000 Sobic005G030300--Sobic008G165100 Sobic005G030300--Sobic002G095700 Sobic003G433500 Sobic003G433500 Sobic005G030300--Sobic003G433500 Sobic005G030300--Sobic002G045400 Sobic005G030300--Sobic006G278200 Sobic005G030300--Sobic008G101800 Sobic002G362300 Sobic002G362300 Sobic005G030300--Sobic002G362300 Sobic009G022100 Sobic009G022100 Sobic005G030300--Sobic009G022100 Sobic006G278200--Sobic002G095700 Sobic006G278200--Sobic008G073000 Sobic005G072400 Sobic005G072400 Sobic006G278200--Sobic005G072400 Sobic006G278200--Sobic005G030300 Sobic006G278200--Sobic001G202266 Sobic002G341100 Sobic002G341100 Sobic006G278200--Sobic002G341100 Sobic009G137900 Sobic009G137900 Sobic006G278200--Sobic009G137900 Sobic002G089900 Sobic002G089900 Sobic006G278200--Sobic002G089900 Sobic006G278200--Sobic002G067800 Sobic001G206100 Sobic001G206100 Sobic003G073000--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic003G073000--Sobic004G257400 Sobic004G041500 Sobic004G041500 Sobic003G073000--Sobic004G041500 Sobic003G073000--Sobic007G185900 Sobic003G073000--Sobic006G186400 Sobic004G349900 Sobic004G349900 Sobic003G073000--Sobic004G349900 Sobic001G408700 Sobic001G408700 Sobic003G073000--Sobic001G408700 Sobic001G517500 Sobic001G517500 Sobic003G073000--Sobic001G517500 Sobic001G251700 Sobic001G251700 Sobic003G073000--Sobic001G251700 Sobic006G128800 Sobic006G128800 Sobic006G130200--Sobic006G128800 Sobic006G130200--Sobic004G218300 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic003G398400 Sobic003G398400 Sobic006G130200--Sobic003G398400 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic003G336800 Sobic003G336800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic008G129700 Sobic008G129700 Sobic002G061400--Sobic008G129700 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic010G199800 Sobic010G199800 Sobic002G061400--Sobic010G199800 Sobic008G034600 Sobic008G034600 Sobic002G061400--Sobic008G034600 Sobic002G061400--Sobic008G116500 Sobic002G297800 Sobic002G297800 Sobic002G061400--Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G061400--Sobic002G049000 Sobic008G117200 Sobic008G117200 Sobic002G061400--Sobic008G117200
Octagon: transcription factors


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