Gene annotation
Transcriptome id Sobic.006G278200.1
Synonym Sb06g033900
Functional annotation RNA-binding region RNP-1, putative, expressed
UniProt C5YB30
Pfam -
Panther DB PTHR36309 PTHR36309:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05970 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os09g02400.3 : RNA-binding region RNP-1, putative, expressed
MaizeGDB (Corn) Zm00025a010615 , Zm00025a010533
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G278200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
2 Sobic.008G073000 expressed protein -
3 Sobic.005G072400 expressed protein -
4 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.001G202266 - -
6 Sobic.002G341100 bromodomain domain containing protein, expressed -
7 Sobic.009G137900 OsFBL9 - F-box domain and LRR containing protein, expressed -
8 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
9 Sobic.002G067800 - -
10 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
11 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
12 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
13 Sobic.006G051900 expressed protein -
14 Sobic.001G472100 frigida, putative, expressed -
15 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
16 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
17 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
19 Sobic.006G248500 expressed protein -
20 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -


Gene co-expression network
sample Sobic006G278200 Sobic006G278200 Sobic002G095700 Sobic002G095700 Sobic006G278200--Sobic002G095700 Sobic008G073000 Sobic008G073000 Sobic006G278200--Sobic008G073000 Sobic005G072400 Sobic005G072400 Sobic006G278200--Sobic005G072400 Sobic005G030300 Sobic005G030300 Sobic006G278200--Sobic005G030300 Sobic001G202266 Sobic001G202266 Sobic006G278200--Sobic001G202266 Sobic002G341100 Sobic002G341100 Sobic006G278200--Sobic002G341100 Sobic009G137900 Sobic009G137900 Sobic006G278200--Sobic009G137900 Sobic002G089900 Sobic002G089900 Sobic006G278200--Sobic002G089900 Sobic002G067800 Sobic002G067800 Sobic006G278200--Sobic002G067800 Sobic002G095700--Sobic006G278200 Sobic002G095700--Sobic008G073000 Sobic002G095700--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G095700--Sobic008G165100 Sobic002G095700--Sobic002G067800 Sobic003G433500 Sobic003G433500 Sobic002G095700--Sobic003G433500 Sobic002G095700--Sobic002G089900 Sobic009G022100 Sobic009G022100 Sobic002G095700--Sobic009G022100 Sobic004G078100 Sobic004G078100 Sobic002G095700--Sobic004G078100 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic008G073000--Sobic001G202266 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic005G072400--Sobic006G278200 Sobic002G253600 Sobic002G253600 Sobic005G072400--Sobic002G253600 Sobic005G198200 Sobic005G198200 Sobic005G072400--Sobic005G198200 Sobic003G343600 Sobic003G343600 Sobic005G072400--Sobic003G343600 Sobic005G072400--Sobic009G137900 Sobic001G230500 Sobic001G230500 Sobic005G072400--Sobic001G230500 Sobic003G415100 Sobic003G415100 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic006G261100 Sobic006G261100 Sobic005G072400--Sobic006G261100 Sobic005G030300--Sobic008G073000 Sobic005G030300--Sobic008G165100 Sobic005G030300--Sobic002G095700 Sobic005G030300--Sobic003G433500 Sobic005G030300--Sobic002G045400 Sobic005G030300--Sobic006G278200 Sobic005G030300--Sobic008G101800 Sobic002G362300 Sobic002G362300 Sobic005G030300--Sobic002G362300 Sobic005G030300--Sobic009G022100 Sobic001G202266--Sobic008G073000 Sobic001G425000 Sobic001G425000 Sobic001G202266--Sobic001G425000 Sobic002G001600 Sobic002G001600 Sobic001G202266--Sobic002G001600 Sobic004G116600 Sobic004G116600 Sobic001G202266--Sobic004G116600 Sobic001G202266--Sobic005G030300 Sobic001G202266--Sobic006G278200 Sobic003G073000 Sobic003G073000 Sobic001G202266--Sobic003G073000 Sobic006G130200 Sobic006G130200 Sobic001G202266--Sobic006G130200 Sobic002G061400 Sobic002G061400 Sobic001G202266--Sobic002G061400 Sobic001G033400 Sobic001G033400 Sobic002G341100--Sobic001G033400 Sobic001G041400 Sobic001G041400 Sobic002G341100--Sobic001G041400 Sobic002G341100--Sobic006G278200 Sobic002G341100--Sobic002G095700 Sobic002G341100--Sobic002G067800 Sobic003G035500 Sobic003G035500 Sobic002G341100--Sobic003G035500 Sobic002G341100--Sobic008G073000 Sobic004G256200 Sobic004G256200 Sobic002G341100--Sobic004G256200 Sobic006G120400 Sobic006G120400 Sobic002G341100--Sobic006G120400 Sobic009G017200 Sobic009G017200 Sobic009G137900--Sobic009G017200 Sobic009G137900--Sobic005G198200 Sobic003G051700 Sobic003G051700 Sobic009G137900--Sobic003G051700 Sobic009G137900--Sobic006G278200 Sobic004G180900 Sobic004G180900 Sobic009G137900--Sobic004G180900 Sobic008G111800 Sobic008G111800 Sobic009G137900--Sobic008G111800 Sobic001G426900 Sobic001G426900 Sobic009G137900--Sobic001G426900 Sobic009G137900--Sobic005G072400 Sobic009G137900--Sobic003G343600 Sobic002G089900--Sobic004G078100 Sobic009G044900 Sobic009G044900 Sobic002G089900--Sobic009G044900 Sobic002G089900--Sobic003G433500 Sobic006G248500 Sobic006G248500 Sobic002G089900--Sobic006G248500 Sobic003G132700 Sobic003G132700 Sobic002G089900--Sobic003G132700 Sobic002G089900--Sobic002G095700 Sobic007G117100 Sobic007G117100 Sobic002G089900--Sobic007G117100 Sobic004G013600 Sobic004G013600 Sobic002G089900--Sobic004G013600 Sobic002G259800 Sobic002G259800 Sobic002G089900--Sobic002G259800 Sobic010G194700 Sobic010G194700 Sobic002G067800--Sobic010G194700 Sobic002G067800--Sobic008G165100 Sobic005G059100 Sobic005G059100 Sobic002G067800--Sobic005G059100 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G067800--Sobic002G159200 Sobic003G355000 Sobic003G355000 Sobic002G067800--Sobic003G355000 Sobic007G043500 Sobic007G043500 Sobic002G067800--Sobic007G043500 Sobic006G123900 Sobic006G123900 Sobic002G067800--Sobic006G123900
Octagon: transcription factors


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