Gene annotation
Transcriptome id Sobic.003G343600.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6Q6T9
Pfam PF13920
Panther DB PTHR12313:SF8 PTHR12313
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44410 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g61420.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039729
Brachypodium KQK05811 , KQK10411
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G343600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G140900 OsFBL33 - F-box domain and LRR containing protein, expressed -
2 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
3 Sobic.005G072400 expressed protein -
4 Sobic.006G248500 expressed protein -
5 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
6 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
7 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
8 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
9 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
10 Sobic.006G100000 pentatricopeptide, putative, expressed -
11 Sobic.001G522400 FHA domain containing protein, putative, expressed -
12 Sobic.009G137900 OsFBL9 - F-box domain and LRR containing protein, expressed -
13 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
14 Sobic.003G417900 cullin-1, putative, expressed -
15 Sobic.003G114500 zinc knuckle family protein, putative, expressed -
16 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
17 Sobic.005G009200 expressed protein -
18 Sobic.001G215400 OsFBX387 - F-box domain containing protein, expressed -
19 Sobic.009G151200 expressed protein -
20 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7


Gene co-expression network
sample Sobic003G343600 Sobic003G343600 Sobic003G140900 Sobic003G140900 Sobic003G343600--Sobic003G140900 Sobic002G223300 Sobic002G223300 Sobic003G343600--Sobic002G223300 Sobic005G072400 Sobic005G072400 Sobic003G343600--Sobic005G072400 Sobic006G248500 Sobic006G248500 Sobic003G343600--Sobic006G248500 Sobic004G285000 Sobic004G285000 Sobic003G343600--Sobic004G285000 Sobic002G268900 Sobic002G268900 Sobic003G343600--Sobic002G268900 Sobic005G198200 Sobic005G198200 Sobic003G343600--Sobic005G198200 Sobic006G278200 Sobic006G278200 Sobic003G343600--Sobic006G278200 Sobic004G085300 Sobic004G085300 Sobic003G343600--Sobic004G085300 Sobic003G140900--Sobic003G343600 Sobic003G140900--Sobic002G223300 Sobic002G014700 Sobic002G014700 Sobic003G140900--Sobic002G014700 Sobic001G108900 Sobic001G108900 Sobic003G140900--Sobic001G108900 Sobic002G089900 Sobic002G089900 Sobic003G140900--Sobic002G089900 Sobic007G117100 Sobic007G117100 Sobic003G140900--Sobic007G117100 Sobic003G354100 Sobic003G354100 Sobic003G140900--Sobic003G354100 Sobic003G132700 Sobic003G132700 Sobic003G140900--Sobic003G132700 Sobic003G140900--Sobic004G285000 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic002G223300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic002G223300--Sobic006G210200 Sobic002G050500 Sobic002G050500 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic005G072400--Sobic006G278200 Sobic002G253600 Sobic002G253600 Sobic005G072400--Sobic002G253600 Sobic005G072400--Sobic005G198200 Sobic005G072400--Sobic003G343600 Sobic009G137900 Sobic009G137900 Sobic005G072400--Sobic009G137900 Sobic001G230500 Sobic001G230500 Sobic005G072400--Sobic001G230500 Sobic003G415100 Sobic003G415100 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic006G261100 Sobic006G261100 Sobic005G072400--Sobic006G261100 Sobic001G469800 Sobic001G469800 Sobic006G248500--Sobic001G469800 Sobic002G259800 Sobic002G259800 Sobic006G248500--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic006G248500--Sobic003G433500 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic004G013600 Sobic004G013600 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic002G033600 Sobic002G033600 Sobic002G268900--Sobic002G033600 Sobic001G522400 Sobic001G522400 Sobic002G268900--Sobic001G522400 Sobic010G237650 Sobic010G237650 Sobic002G268900--Sobic010G237650 Sobic002G268900--Sobic004G085300 Sobic009G129600 Sobic009G129600 Sobic002G268900--Sobic009G129600 Sobic002G268900--Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic002G268900--Sobic007G139400 Sobic002G268900--Sobic003G343600 Sobic001G346700 Sobic001G346700 Sobic002G268900--Sobic001G346700 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic009G113100 Sobic009G113100 Sobic005G198200--Sobic009G113100 Sobic005G198200--Sobic009G137900 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500 Sobic002G095700 Sobic002G095700 Sobic006G278200--Sobic002G095700 Sobic008G073000 Sobic008G073000 Sobic006G278200--Sobic008G073000 Sobic006G278200--Sobic005G072400 Sobic005G030300 Sobic005G030300 Sobic006G278200--Sobic005G030300 Sobic001G202266 Sobic001G202266 Sobic006G278200--Sobic001G202266 Sobic002G341100 Sobic002G341100 Sobic006G278200--Sobic002G341100 Sobic006G278200--Sobic009G137900 Sobic006G278200--Sobic002G089900 Sobic002G067800 Sobic002G067800 Sobic006G278200--Sobic002G067800 Sobic004G085300--Sobic009G151200 Sobic004G085300--Sobic002G223300 Sobic004G085300--Sobic001G522400 Sobic004G085300--Sobic002G268900 Sobic004G085300--Sobic004G086200 Sobic002G421700 Sobic002G421700 Sobic004G085300--Sobic002G421700 Sobic004G085300--Sobic002G259800 Sobic004G085300--Sobic004G285000 Sobic004G085300--Sobic006G210200
Octagon: transcription factors


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