Gene annotation
Transcriptome id Sobic.003G114500.1
Synonym Sb03g009630
Functional annotation zinc knuckle family protein, putative, expressed
UniProt C5XFS9
Pfam -
Panther DB PTHR34210 PTHR34210:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62330 : Zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os01g14920.1 : zinc knuckle family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035348
Brachypodium KQK03620 , PNT70270
Barley HORVU3Hr1G034630.6 , HORVU3Hr1G034630.10 , HORVU3Hr1G034630.9 , HORVU3Hr1G034630.8 , HORVU3Hr1G034630.1 , HORVU3Hr1G034630.3 , HORVU3Hr1G034630.2 , HORVU3Hr1G034630.5 , HORVU3Hr1G034630.4 , HORVU3Hr1G034630.7
Wheat TraesCS3D02G178100 , TraesCS3A02G171400
Populus PNT04341 , PNT04340 , PNT04343 , PNT04344 , PNT50559 , PNT04342 , PNT50560 , PNT50561 , PNT50562 , PNT50563 , PNT04338 , PNT04339


JBrowse

Open New Page


cDNA sequences
Sobic.003G114500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G151200 expressed protein -
2 Sobic.002G383300 MYST-like histone acetyltransferase 1, putative, expressed K11308: MYST1, MOF, histone acetyltransferase MYST1
3 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
4 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.001G424600 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
7 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
8 Sobic.007G187600 pentatricopeptide, putative, expressed -
9 Sobic.006G049100 expressed protein -
10 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
11 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
12 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
13 Sobic.005G178950 - -
14 Sobic.001G066300 cell cycle control protein, putative, expressed -
15 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
16 Sobic.007G026000 ATBET9, putative, expressed -
17 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
18 Sobic.006G248500 expressed protein -
19 Sobic.004G036300 marker Xucw84, putative, expressed -
20 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -


Gene co-expression network
sample Sobic003G114500 Sobic003G114500 Sobic009G151200 Sobic009G151200 Sobic003G114500--Sobic009G151200 Sobic002G383300 Sobic002G383300 Sobic003G114500--Sobic002G383300 Sobic006G161000 Sobic006G161000 Sobic003G114500--Sobic006G161000 Sobic010G077500 Sobic010G077500 Sobic003G114500--Sobic010G077500 Sobic004G049700 Sobic004G049700 Sobic003G114500--Sobic004G049700 Sobic001G424600 Sobic001G424600 Sobic003G114500--Sobic001G424600 Sobic007G056500 Sobic007G056500 Sobic003G114500--Sobic007G056500 Sobic007G187600 Sobic007G187600 Sobic003G114500--Sobic007G187600 Sobic006G049100 Sobic006G049100 Sobic003G114500--Sobic006G049100 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic004G285000 Sobic004G285000 Sobic009G151200--Sobic004G285000 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic008G100100 Sobic008G100100 Sobic009G151200--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic002G383300--Sobic003G114500 Sobic001G216100 Sobic001G216100 Sobic002G383300--Sobic001G216100 Sobic006G121300 Sobic006G121300 Sobic002G383300--Sobic006G121300 Sobic010G028300 Sobic010G028300 Sobic002G383300--Sobic010G028300 Sobic009G083200 Sobic009G083200 Sobic002G383300--Sobic009G083200 Sobic002G383300--Sobic007G056500 Sobic001G376800 Sobic001G376800 Sobic002G383300--Sobic001G376800 Sobic007G075900 Sobic007G075900 Sobic002G383300--Sobic007G075900 Sobic002G383300--Sobic006G049100 Sobic003G038100 Sobic003G038100 Sobic006G161000--Sobic003G038100 Sobic006G161000--Sobic004G049700 Sobic001G405300 Sobic001G405300 Sobic006G161000--Sobic001G405300 Sobic006G186400 Sobic006G186400 Sobic006G161000--Sobic006G186400 Sobic006G161000--Sobic010G077500 Sobic007G026000 Sobic007G026000 Sobic006G161000--Sobic007G026000 Sobic006G161000--Sobic003G114500 Sobic004G180900 Sobic004G180900 Sobic006G161000--Sobic004G180900 Sobic007G146900 Sobic007G146900 Sobic006G161000--Sobic007G146900 Sobic001G042200 Sobic001G042200 Sobic010G077500--Sobic001G042200 Sobic010G077500--Sobic006G049100 Sobic004G345400 Sobic004G345400 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic008G058800 Sobic008G058800 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic004G049700--Sobic001G424600 Sobic004G049700--Sobic002G063900 Sobic002G148400 Sobic002G148400 Sobic004G049700--Sobic002G148400 Sobic006G039800 Sobic006G039800 Sobic004G049700--Sobic006G039800 Sobic002G154000 Sobic002G154000 Sobic004G049700--Sobic002G154000 Sobic004G049700--Sobic006G161000 Sobic001G346900 Sobic001G346900 Sobic004G049700--Sobic001G346900 Sobic001G461400 Sobic001G461400 Sobic004G049700--Sobic001G461400 Sobic007G004000 Sobic007G004000 Sobic004G049700--Sobic007G004000 Sobic001G424600--Sobic004G049700 Sobic001G424600--Sobic009G151200 Sobic001G424600--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic001G424600--Sobic006G116100 Sobic002G423200 Sobic002G423200 Sobic001G424600--Sobic002G423200 Sobic002G278000 Sobic002G278000 Sobic001G424600--Sobic002G278000 Sobic003G160000 Sobic003G160000 Sobic001G424600--Sobic003G160000 Sobic001G424600--Sobic008G058800 Sobic002G357700 Sobic002G357700 Sobic001G424600--Sobic002G357700 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic007G056500--Sobic006G121300 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic006G049100--Sobic010G077500 Sobic006G049100--Sobic001G042200 Sobic001G487100 Sobic001G487100 Sobic006G049100--Sobic001G487100 Sobic006G049100--Sobic007G056500 Sobic006G049100--Sobic001G168900 Sobic006G049100--Sobic004G345400 Sobic006G049100--Sobic007G187600 Sobic003G132000 Sobic003G132000 Sobic006G049100--Sobic003G132000 Sobic006G049100--Sobic001G395100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.