Gene annotation
Transcriptome id Sobic.007G056500.1
Synonym ATCUL3, Sb07g004560, CUL3, ATCUL3A, CUL3A
Functional annotation cullin, putative, expressed
UniProt C5YHJ0
Pfam PF10557 PF00888
Panther DB PTHR11932 PTHR11932:SF79
NCBI CDD KOG2167; Cullins
KEGG Orthology K03869; cullin 3
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G26830 : cullin 3
RAP-DB (Rice) LOC_Os08g07400.1 : cullin, putative, expressed
MaizeGDB (Corn) Zm00025a055037 , Zm00025a030030
Brachypodium KQJ95221 , KQK01936
Barley HORVU2Hr1G115070.1 , HORVU2Hr1G115070.3 , HORVU6Hr1G075720.1 , HORVU6Hr1G075720.2
Wheat TraesCS6A02G306600 , TraesCS6B02G335200 , TraesCS2B02G550000 , TraesCS6D02G285800 , TraesCS2D02G522400 , TraesCS2A02G520700
Populus -


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cDNA sequences
Sobic.007G056500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
2 Sobic.002G034600 zinc ion binding protein, putative, expressed -
3 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
4 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
6 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
7 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
8 Sobic.001G066300 cell cycle control protein, putative, expressed -
9 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
10 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
11 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
12 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
13 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
14 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
15 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
16 Sobic.006G049100 expressed protein -
17 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
18 Sobic.006G248500 expressed protein -
19 Sobic.009G198100 expressed protein -
20 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A


Gene co-expression network
sample Sobic007G056500 Sobic007G056500 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic001G042200 Sobic001G042200 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic010G095700--Sobic007G056500 Sobic010G095700--Sobic001G473600 Sobic006G261100 Sobic006G261100 Sobic010G095700--Sobic006G261100 Sobic001G390500 Sobic001G390500 Sobic010G095700--Sobic001G390500 Sobic010G095700--Sobic002G034600 Sobic001G497900 Sobic001G497900 Sobic010G095700--Sobic001G497900 Sobic007G111100 Sobic007G111100 Sobic010G095700--Sobic007G111100 Sobic010G095700--Sobic003G355000 Sobic001G469800 Sobic001G469800 Sobic010G095700--Sobic001G469800 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G180900--Sobic004G345400 Sobic004G180900--Sobic006G186400 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic001G395100--Sobic006G121300 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G395100--Sobic001G473600 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G395100--Sobic001G042200 Sobic001G066300--Sobic008G173100 Sobic001G066300--Sobic006G186400 Sobic001G026200 Sobic001G026200 Sobic001G066300--Sobic001G026200 Sobic007G090430 Sobic007G090430 Sobic001G066300--Sobic007G090430 Sobic001G066300--Sobic007G056500 Sobic001G398800 Sobic001G398800 Sobic001G066300--Sobic001G398800 Sobic002G071500 Sobic002G071500 Sobic001G066300--Sobic002G071500 Sobic001G066300--Sobic002G264200 Sobic001G066300--Sobic002G063900 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic005G160400 Sobic005G160400 Sobic006G121300--Sobic005G160400
Octagon: transcription factors


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