Gene annotation
Transcriptome id Sobic.006G121300.1
Synonym SWI3A, ATSWI3A, CHB1, Sb06g020190
Functional annotation SWIRM domain containing protein, expressed
UniProt C5YAR6
Pfam PF00249 PF16495 PF04433
Panther DB PTHR12802 PTHR12802:SF2
NCBI CDD KOG1279; Chromatin remodeling factor subunit and related transcription factors
KEGG Orthology K11649; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G47620 : SWITCH/sucrose nonfermenting 3A
RAP-DB (Rice) LOC_Os04g40420.1 : SWIRM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010984
Brachypodium KQJ83169
Barley -
Wheat TraesCS2D02G337400 , TraesCS2B02G356600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
2 Sobic.002G034600 zinc ion binding protein, putative, expressed -
3 Sobic.001G216100 expressed protein -
4 Sobic.010G028300 bromodomain domain containing protein, expressed -
5 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
6 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
7 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
8 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
9 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
10 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
11 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
12 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.002G126500 RNA recognition motif containing protein, expressed -
15 Sobic.010G245000 DTW domain containing protein, putative, expressed -
16 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
17 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
18 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
19 Sobic.001G315100 TKL_IRAK_CrRLK1L-1.16 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
20 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2


Gene co-expression network
sample Sobic006G121300 Sobic006G121300 Sobic001G395100 Sobic001G395100 Sobic006G121300--Sobic001G395100 Sobic002G034600 Sobic002G034600 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic007G056500 Sobic007G056500 Sobic006G121300--Sobic007G056500 Sobic001G473600 Sobic001G473600 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic005G160400 Sobic005G160400 Sobic006G121300--Sobic005G160400 Sobic001G395100--Sobic006G121300 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic001G216100--Sobic006G121300 Sobic001G216100--Sobic010G028300 Sobic002G383300 Sobic002G383300 Sobic001G216100--Sobic002G383300 Sobic001G216100--Sobic001G395100 Sobic003G439800 Sobic003G439800 Sobic001G216100--Sobic003G439800 Sobic007G075900 Sobic007G075900 Sobic001G216100--Sobic007G075900 Sobic001G216100--Sobic007G056500 Sobic004G266900 Sobic004G266900 Sobic001G216100--Sobic004G266900 Sobic009G036200 Sobic009G036200 Sobic001G216100--Sobic009G036200 Sobic010G028300--Sobic003G401100 Sobic002G350300 Sobic002G350300 Sobic010G028300--Sobic002G350300 Sobic001G056200 Sobic001G056200 Sobic010G028300--Sobic001G056200 Sobic010G028300--Sobic006G121300 Sobic001G131800 Sobic001G131800 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic010G028300--Sobic008G179700 Sobic010G028300--Sobic003G081000 Sobic004G013600 Sobic004G013600 Sobic010G028300--Sobic004G013600 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic007G056500--Sobic006G121300 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic001G473600--Sobic007G075900 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic001G281600 Sobic001G281600 Sobic008G179700--Sobic001G281600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G401100--Sobic003G081000 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500
Octagon: transcription factors


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