Gene annotation
Transcriptome id Sobic.001G356600.1
Synonym Sb01g034070
Functional annotation KH domain-containing protein, putative, expressed
UniProt A0A1B6QMZ8
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF149
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G15270 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os03g25970.2 : KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052062 , Zm00025a002659
Brachypodium PNT77330 , KQK21512 , KQK21513 , KQK21511 , KQK21509
Barley HORVU4Hr1G049680.3 , HORVU4Hr1G049680.2 , HORVU4Hr1G049680.1 , HORVU4Hr1G049680.6 , HORVU4Hr1G049680.5 , HORVU4Hr1G049680.4
Wheat -
Populus -


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cDNA sequences
Sobic.001G356600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
2 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
3 Sobic.002G034600 zinc ion binding protein, putative, expressed -
4 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
5 Sobic.009G228700 expressed protein -
6 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
8 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
9 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
10 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
11 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
12 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
13 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
14 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
16 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
17 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
18 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
19 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
20 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5


Gene co-expression network
sample Sobic001G356600 Sobic001G356600 Sobic004G066200 Sobic004G066200 Sobic001G356600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic001G356600--Sobic003G248200 Sobic002G034600 Sobic002G034600 Sobic001G356600--Sobic002G034600 Sobic001G512700 Sobic001G512700 Sobic001G356600--Sobic001G512700 Sobic009G228700 Sobic009G228700 Sobic001G356600--Sobic009G228700 Sobic009G179700 Sobic009G179700 Sobic001G356600--Sobic009G179700 Sobic010G018700 Sobic010G018700 Sobic001G356600--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic001G356600--Sobic008G179700 Sobic004G274200 Sobic004G274200 Sobic001G356600--Sobic004G274200 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic003G248200--Sobic001G512700 Sobic003G248200--Sobic001G356600 Sobic003G248200--Sobic008G179700 Sobic003G248200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic003G248200--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic003G248200--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic003G248200--Sobic002G297200 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic002G350300 Sobic002G350300 Sobic009G179700--Sobic002G350300 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic009G179700--Sobic010G018700 Sobic009G179700--Sobic008G179700 Sobic007G078500 Sobic007G078500 Sobic009G179700--Sobic007G078500 Sobic003G029100 Sobic003G029100 Sobic009G179700--Sobic003G029100 Sobic007G061000 Sobic007G061000 Sobic009G179700--Sobic007G061000 Sobic009G179700--Sobic001G512700 Sobic010G018700--Sobic001G356600 Sobic010G018700--Sobic009G179700 Sobic010G027600 Sobic010G027600 Sobic010G018700--Sobic010G027600 Sobic004G104900 Sobic004G104900 Sobic010G018700--Sobic004G104900 Sobic003G439800 Sobic003G439800 Sobic010G018700--Sobic003G439800 Sobic009G058500 Sobic009G058500 Sobic010G018700--Sobic009G058500 Sobic004G141700 Sobic004G141700 Sobic010G018700--Sobic004G141700 Sobic010G193800 Sobic010G193800 Sobic010G018700--Sobic010G193800 Sobic010G018700--Sobic004G066200 Sobic008G179700--Sobic002G350300 Sobic008G179700--Sobic003G248200 Sobic001G281600 Sobic001G281600 Sobic008G179700--Sobic001G281600 Sobic008G179700--Sobic001G356600 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic003G401100 Sobic003G401100 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic008G179700--Sobic001G512700 Sobic004G274200--Sobic008G047800 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000
Octagon: transcription factors


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