Gene annotation
Transcriptome id Sobic.001G395100.2,Sobic.001G395100.1
Synonym Sb01g037410
Functional annotation -
UniProt C5WMG3 , A0A1Z5S9V0
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF125
NCBI CDD -
KEGG Orthology K12835; DDX42, ATP-dependent RNA helicase DDX42
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G47330 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g19530.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a052551 , Zm00025a002151
Brachypodium KQK21979 , KQK21989
Barley HORVU4Hr1G053550.1 , HORVU4Hr1G053550.2 , HORVU4Hr1G053550.3 , HORVU4Hr1G053550.4 , HORVU4Hr1G053550.5 , HORVU4Hr1G053550.6 , HORVU4Hr1G053630.1
Wheat TraesCS4A02G121700 , TraesCS4B02G181800 , TraesCS4D02G184200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
2 Sobic.002G034600 zinc ion binding protein, putative, expressed -
3 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
4 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
5 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
6 Sobic.007G027700 expressed protein -
7 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
8 Sobic.006G248500 expressed protein -
9 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
10 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
11 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
12 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
13 Sobic.007G183900 ubiquitin family protein, putative, expressed -
14 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
15 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
16 Sobic.002G295500 expressed protein -
17 Sobic.003G416700 homeobox domain containing protein, expressed -
18 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.004G266900 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
20 Sobic.003G212900 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G395100 Sobic001G395100 Sobic006G121300 Sobic006G121300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic005G160400 Sobic005G160400 Sobic006G121300--Sobic005G160400 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G091600 Sobic007G091600 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic007G191700--Sobic001G473600 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic010G202600 Sobic010G202600 Sobic001G469800--Sobic010G202600 Sobic001G469800--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic001G469800--Sobic002G259800 Sobic001G469800--Sobic001G395100 Sobic003G433500 Sobic003G433500 Sobic001G469800--Sobic003G433500 Sobic008G129700 Sobic008G129700 Sobic001G469800--Sobic008G129700 Sobic007G111100 Sobic007G111100 Sobic001G469800--Sobic007G111100 Sobic006G267300 Sobic006G267300 Sobic001G469800--Sobic006G267300 Sobic008G127400 Sobic008G127400 Sobic001G469800--Sobic008G127400 Sobic007G027700--Sobic008G127400 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic001G143500 Sobic001G143500 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic007G027700--Sobic005G216300 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic007G027700--Sobic006G267300 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic007G056500--Sobic006G121300 Sobic006G248500--Sobic001G469800 Sobic006G248500--Sobic002G259800 Sobic006G248500--Sobic003G433500 Sobic009G151200 Sobic009G151200 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic004G013600 Sobic004G013600 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700
Octagon: transcription factors


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