Gene annotation
Transcriptome id Sobic.004G266900.1
Synonym Sb04g030490
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt C5Y0B1
Pfam PF00004 PF12037
Panther DB PTHR23075 PTHR23075:SF3
NCBI CDD -
KEGG Orthology K17681; ATPase family AAA domain-containing protein 3A/B
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G18330 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os02g47760.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032465 , Zm00025a021730
Brachypodium PNT69289 , KQK00948
Barley HORVU6Hr1G069110.8 , HORVU6Hr1G069110.13 , HORVU6Hr1G069110.12 , HORVU6Hr1G069110.11 , HORVU6Hr1G069110.10 , HORVU6Hr1G069110.3 , HORVU6Hr1G069110.2 , HORVU6Hr1G069110.1 , HORVU6Hr1G069110.7 , HORVU6Hr1G069110.6 , HORVU6Hr1G069110.5 , HORVU6Hr1G069110.4 , HORVU6Hr1G069110.9
Wheat TraesCS6B02G300900 , TraesCS6D02G253600 , TraesCS6A02G273800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
2 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
3 Sobic.009G095100 expressed protein -
4 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
5 Sobic.004G155600 dnaJ domain containing protein, expressed -
6 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
7 Sobic.007G091600 proline rich protein 3, putative, expressed -
8 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
10 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
11 Sobic.006G204800 APO, putative, expressed -
12 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
14 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
15 Sobic.006G118700 MYB family transcription factor, putative, expressed -
16 Sobic.003G379200 wound-responsive family protein, putative, expressed -
17 Sobic.001G002600 expressed protein -
18 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
19 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
20 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6


Gene co-expression network
sample Sobic004G266900 Sobic004G266900 Sobic006G014100 Sobic006G014100 Sobic004G266900--Sobic006G014100 Sobic001G395100 Sobic001G395100 Sobic004G266900--Sobic001G395100 Sobic009G095100 Sobic009G095100 Sobic004G266900--Sobic009G095100 Sobic006G240100 Sobic006G240100 Sobic004G266900--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic004G266900--Sobic004G155600 Sobic006G121300 Sobic006G121300 Sobic004G266900--Sobic006G121300 Sobic007G091600 Sobic007G091600 Sobic004G266900--Sobic007G091600 Sobic007G071200 Sobic007G071200 Sobic004G266900--Sobic007G071200 Sobic007G075900 Sobic007G075900 Sobic004G266900--Sobic007G075900 Sobic006G014100--Sobic004G155600 Sobic010G237900 Sobic010G237900 Sobic006G014100--Sobic010G237900 Sobic006G014100--Sobic004G266900 Sobic007G191700 Sobic007G191700 Sobic006G014100--Sobic007G191700 Sobic006G014100--Sobic001G395100 Sobic006G270600 Sobic006G270600 Sobic006G014100--Sobic006G270600 Sobic001G002600 Sobic001G002600 Sobic006G014100--Sobic001G002600 Sobic003G379200 Sobic003G379200 Sobic006G014100--Sobic003G379200 Sobic008G047300 Sobic008G047300 Sobic006G014100--Sobic008G047300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic001G522600 Sobic001G522600 Sobic009G095100--Sobic001G522600 Sobic007G061000 Sobic007G061000 Sobic009G095100--Sobic007G061000 Sobic003G029100 Sobic003G029100 Sobic009G095100--Sobic003G029100 Sobic003G143200 Sobic003G143200 Sobic009G095100--Sobic003G143200 Sobic009G179700 Sobic009G179700 Sobic009G095100--Sobic009G179700 Sobic008G112800 Sobic008G112800 Sobic009G095100--Sobic008G112800 Sobic009G095100--Sobic004G266900 Sobic008G153500 Sobic008G153500 Sobic009G095100--Sobic008G153500 Sobic004G092500 Sobic004G092500 Sobic009G095100--Sobic004G092500 Sobic009G044800 Sobic009G044800 Sobic006G240100--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic006G240100--Sobic003G416700 Sobic002G154000 Sobic002G154000 Sobic006G240100--Sobic002G154000 Sobic007G132100 Sobic007G132100 Sobic006G240100--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G240100--Sobic007G218000 Sobic003G360400 Sobic003G360400 Sobic006G240100--Sobic003G360400 Sobic010G204400 Sobic010G204400 Sobic006G240100--Sobic010G204400 Sobic001G354600 Sobic001G354600 Sobic006G240100--Sobic001G354600 Sobic004G072100 Sobic004G072100 Sobic006G240100--Sobic004G072100 Sobic004G155600--Sobic006G014100 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic004G155600--Sobic001G002600 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic005G160400 Sobic005G160400 Sobic006G121300--Sobic005G160400 Sobic007G091600--Sobic006G118700 Sobic007G091600--Sobic007G191700 Sobic002G264200 Sobic002G264200 Sobic007G091600--Sobic002G264200 Sobic004G084300 Sobic004G084300 Sobic007G091600--Sobic004G084300 Sobic005G021500 Sobic005G021500 Sobic007G091600--Sobic005G021500 Sobic010G236400 Sobic010G236400 Sobic007G091600--Sobic010G236400 Sobic009G177500 Sobic009G177500 Sobic007G091600--Sobic009G177500 Sobic004G129300 Sobic004G129300 Sobic007G091600--Sobic004G129300 Sobic003G394300 Sobic003G394300 Sobic007G091600--Sobic003G394300 Sobic008G173100 Sobic008G173100 Sobic007G071200--Sobic008G173100 Sobic009G050900 Sobic009G050900 Sobic007G071200--Sobic009G050900 Sobic001G493200 Sobic001G493200 Sobic007G071200--Sobic001G493200 Sobic007G071200--Sobic006G118700 Sobic005G191900 Sobic005G191900 Sobic007G071200--Sobic005G191900 Sobic007G071200--Sobic009G177500 Sobic002G083500 Sobic002G083500 Sobic007G071200--Sobic002G083500 Sobic003G133900 Sobic003G133900 Sobic007G071200--Sobic003G133900 Sobic007G071200--Sobic003G401100 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700
Octagon: transcription factors


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