Gene annotation
Transcriptome id Sobic.007G075900.3,Sobic.007G075900.1,Sobic.007G075900.4
Synonym Sb07g006080, SK20, ASK20
Functional annotation SKP1, putative, expressed
UniProt A0A1B6PG93
Pfam PF01466
Panther DB PTHR11165:SF62 PTHR11165 PTHR11165 PTHR11165:SF62
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT3G61415 : SKP1-like 21
RAP-DB (Rice) LOC_Os03g01660.1 : SKP1, putative, expressed
MaizeGDB (Corn) Zm00025a054864 , Zm00025a000140 , Zm00025a029911 , Zm00025a053571
Brachypodium PNT78360 , PNT78361 , KQK24093
Barley HORVU4Hr1G086820.8 , HORVU4Hr1G086820.9 , HORVU4Hr1G086820.6 , HORVU4Hr1G086820.7 , HORVU4Hr1G086820.4 , HORVU4Hr1G086820.5 , HORVU4Hr1G086820.2 , HORVU4Hr1G086820.3 , HORVU4Hr1G086820.1 , HORVU4Hr1G086820.14 , HORVU4Hr1G086820.17 , HORVU4Hr1G086820.10 , HORVU4Hr1G086820.11 , HORVU4Hr1G086820.12 , HORVU4Hr1G086820.13 , HORVU4Hr1G086820.18 , HORVU4Hr1G086820.19 , HORVU4Hr1G086820.15 , HORVU4Hr1G086820.16 , HORVU4Hr1G086820.29 , HORVU4Hr1G086820.28 , HORVU4Hr1G086820.21 , HORVU4Hr1G086820.20 , HORVU4Hr1G086820.23 , HORVU4Hr1G086820.22 , HORVU4Hr1G086820.25 , HORVU4Hr1G086820.24 , HORVU4Hr1G086820.27 , HORVU4Hr1G086820.26 , HORVU4Hr1G086820.31
Wheat TraesCS4B02G362000 , TraesCS5A02G530000 , TraesCS5A02G530000 , TraesCS5A02G530000 , TraesCS5A02G530000 , TraesCS4D02G355000 , TraesCS4D02G355000 , TraesCS4D02G355000 , TraesCS4D02G355000 , TraesCS4B02G362000 , TraesCS4B02G362000 , TraesCS4D02G355000
Populus -


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cDNA sequences
Sobic.007G075900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
4 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
5 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
6 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
8 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
9 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
10 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
11 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
12 Sobic.006G200600 expressed protein -
13 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
14 Sobic.006G204800 APO, putative, expressed -
15 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
16 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
17 Sobic.003G074400 expressed protein -
18 Sobic.009G032500 expressed protein -
19 Sobic.006G096900 expressed protein -
20 Sobic.003G102400 expressed protein -


Gene co-expression network
sample Sobic007G075900 Sobic007G075900 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic006G200600 Sobic006G200600 Sobic004G353200--Sobic006G200600 Sobic004G353200--Sobic001G392300 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic004G353200--Sobic008G047800 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic001G392300--Sobic006G200600 Sobic001G433800 Sobic001G433800 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic004G274200--Sobic008G047800 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic004G274200--Sobic003G352200 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic009G124700--Sobic007G218000 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G124700--Sobic009G177500 Sobic009G124700--Sobic007G075900 Sobic003G118200 Sobic003G118200 Sobic009G124700--Sobic003G118200 Sobic001G441400 Sobic001G441400 Sobic009G124700--Sobic001G441400 Sobic007G132100 Sobic007G132100 Sobic009G124700--Sobic007G132100 Sobic005G138300 Sobic005G138300 Sobic009G124700--Sobic005G138300
Octagon: transcription factors


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