Gene annotation
Transcriptome id Sobic.010G209000.1,Sobic.010G209000.2
Synonym Sb10g025580, CPL4
Functional annotation NLI interacting factor-like phosphatase, putative, expressed
UniProt C5Z6T3 , A0A1W0VU24
Pfam PF00533 PF03031
Panther DB PTHR23081
NCBI CDD KOG0323; TFIIF-interacting CTD phosphatases, including NLI-interacting factor
KEGG Orthology K18999; RNA polymerase II C-terminal domain phosphatase-like 3/4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58003 : C-terminal domain phosphatase-like 4
RAP-DB (Rice) LOC_Os05g32430.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a033635 , Zm00025a043567
Brachypodium KQJ82478 , KQK06491 , KQK06490
Barley HORVU2Hr1G072470.3 , HORVU2Hr1G072470.4 , HORVU2Hr1G072470.5 , HORVU2Hr1G072470.6 , HORVU2Hr1G072470.7 , HORVU2Hr1G072470.1 , HORVU2Hr1G072470.2
Wheat TraesCS1A02G244200 , TraesCS1B02G255500 , TraesCS1D02G244100 , TraesCS1D02G244100 , TraesCS2D02G290700 , TraesCS1D02G244000 , TraesCS1D02G244000 , TraesCS1D02G244000 , TraesCS1A02G244100 , TraesCS1A02G244100 , TraesCS2B02G309400 , TraesCS2B02G309400 , TraesCS2B02G309400 , TraesCS2A02G293500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
2 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
3 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
4 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
5 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
6 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
7 Sobic.008G050800 expressed protein -
8 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
9 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
10 Sobic.006G204800 APO, putative, expressed -
11 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
12 Sobic.004G115350 - K12843: PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
13 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
14 Sobic.009G083200 coiled-coil domain-containing protein 25, putative, expressed -
15 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
16 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
17 Sobic.001G221500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
18 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
19 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3


Gene co-expression network
sample Sobic010G209000 Sobic010G209000 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic006G101700 Sobic006G101700 Sobic010G209000--Sobic006G101700 Sobic008G124900 Sobic008G124900 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic007G166400 Sobic007G166400 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic001G360200 Sobic001G360200 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic007G093800 Sobic007G093800 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic001G515100--Sobic003G401100 Sobic006G077200 Sobic006G077200 Sobic001G515100--Sobic006G077200 Sobic003G184699 Sobic003G184699 Sobic001G515100--Sobic003G184699 Sobic001G143500 Sobic001G143500 Sobic001G515100--Sobic001G143500 Sobic007G027700 Sobic007G027700 Sobic001G515100--Sobic007G027700 Sobic001G515100--Sobic007G075900 Sobic002G370900 Sobic002G370900 Sobic001G515100--Sobic002G370900 Sobic005G216300 Sobic005G216300 Sobic001G515100--Sobic005G216300 Sobic001G176200 Sobic001G176200 Sobic001G515100--Sobic001G176200 Sobic006G017000--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic006G017000--Sobic009G228700 Sobic006G017000--Sobic006G101700 Sobic006G017000--Sobic004G353200 Sobic006G017000--Sobic001G360200 Sobic006G017000--Sobic001G392300 Sobic002G347000 Sobic002G347000 Sobic006G017000--Sobic002G347000 Sobic006G017000--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic006G017000--Sobic010G027600 Sobic007G166400--Sobic006G101700 Sobic003G264200 Sobic003G264200 Sobic007G166400--Sobic003G264200 Sobic007G166400--Sobic009G222500 Sobic007G166400--Sobic006G049700 Sobic007G167900 Sobic007G167900 Sobic007G166400--Sobic007G167900 Sobic007G166400--Sobic004G066200 Sobic006G044600 Sobic006G044600 Sobic007G166400--Sobic006G044600 Sobic008G153500 Sobic008G153500 Sobic007G166400--Sobic008G153500 Sobic001G114500 Sobic001G114500 Sobic007G166400--Sobic001G114500 Sobic001G466700 Sobic001G466700 Sobic008G050800--Sobic001G466700 Sobic008G050800--Sobic009G228700 Sobic001G091300 Sobic001G091300 Sobic008G050800--Sobic001G091300 Sobic008G050800--Sobic006G017000 Sobic008G050800--Sobic001G360200 Sobic003G289400 Sobic003G289400 Sobic008G050800--Sobic003G289400 Sobic008G050800--Sobic010G209000 Sobic008G050800--Sobic004G066200 Sobic006G249700 Sobic006G249700 Sobic008G050800--Sobic006G249700 Sobic006G278700 Sobic006G278700 Sobic001G360200--Sobic006G278700 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic006G252700 Sobic006G252700 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G360200--Sobic001G143500 Sobic009G058500 Sobic009G058500 Sobic001G360200--Sobic009G058500 Sobic001G360200--Sobic009G228700 Sobic001G360200--Sobic006G101700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600
Octagon: transcription factors


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