Gene annotation
Transcriptome id Sobic.001G221500.2,Sobic.001G221500.1,Sobic.001G221500.3
Synonym Sb01g019490
Functional annotation glutamyl-tRNA synthetase, cytoplasmic, putative, expressed
UniProt C5WYH8
Pfam PF14497 PF03950 PF00749
Panther DB PTHR11451 PTHR11451:SF37
NCBI CDD -
KEGG Orthology K01885; EARS, glutamyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005737cytoplasm GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0016876aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT5G26710 : Glutamyl/glutaminyl-tRNA synthetase, class Ic
RAP-DB (Rice) LOC_Os10g22380.1 : glutamyl-tRNA synthetase, cytoplasmic, putative, expressed
MaizeGDB (Corn) Zm00025a053269 , Zm00025a053271 , Zm00025a053393 , Zm00025a000562 , Zm00025a053267
Brachypodium KQJ94813 , KQK03849
Barley HORVU1Hr1G078370.14 , HORVU1Hr1G078370.10 , HORVU1Hr1G078370.11 , HORVU1Hr1G078370.12 , HORVU1Hr1G078370.13 , HORVU3Hr1G038360.7 , HORVU3Hr1G038360.6 , HORVU3Hr1G038360.5 , HORVU3Hr1G038360.4 , HORVU3Hr1G038360.3 , HORVU3Hr1G038360.2 , HORVU3Hr1G038360.1 , HORVU3Hr1G038360.9 , HORVU3Hr1G038360.8 , HORVU3Hr1G038360.10 , HORVU1Hr1G078370.8 , HORVU1Hr1G078370.9 , HORVU1Hr1G078370.6 , HORVU1Hr1G078370.7 , HORVU1Hr1G078370.4 , HORVU1Hr1G078370.5 , HORVU1Hr1G078370.2 , HORVU1Hr1G078370.3 , HORVU1Hr1G078370.1
Wheat TraesCS3B02G215800 , TraesCS3D02G190200 , TraesCS1D02G345600 , TraesCS1B02G388100 , TraesCS1D02G375300 , TraesCS1D02G375300 , TraesCS1A02G343800 , TraesCS1A02G369400 , TraesCS3A02G186200 , TraesCS1B02G356800
Populus -


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cDNA sequences
Sobic.001G221500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G366500 transport protein particle component, Bet3, domain containing protein, expressed -
2 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
4 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
5 Sobic.009G175300 bifunctional aminoacyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
6 Sobic.007G180100 bifunctional aminoacyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
7 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
8 Sobic.006G200600 expressed protein -
9 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
10 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
11 Sobic.008G004400 GIL1, putative, expressed -
12 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
13 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
14 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
15 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
16 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
17 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
18 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
19 Sobic.006G278700 expressed protein -
20 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7


Gene co-expression network
sample Sobic001G221500 Sobic001G221500 Sobic003G366500 Sobic003G366500 Sobic001G221500--Sobic003G366500 Sobic006G182200 Sobic006G182200 Sobic001G221500--Sobic006G182200 Sobic001G360200 Sobic001G360200 Sobic001G221500--Sobic001G360200 Sobic010G209000 Sobic010G209000 Sobic001G221500--Sobic010G209000 Sobic009G175300 Sobic009G175300 Sobic001G221500--Sobic009G175300 Sobic007G180100 Sobic007G180100 Sobic001G221500--Sobic007G180100 Sobic004G356900 Sobic004G356900 Sobic001G221500--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic001G221500--Sobic006G200600 Sobic007G039400 Sobic007G039400 Sobic001G221500--Sobic007G039400 Sobic003G153700 Sobic003G153700 Sobic003G366500--Sobic003G153700 Sobic003G366500--Sobic001G221500 Sobic001G466700 Sobic001G466700 Sobic003G366500--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic003G366500--Sobic004G274400 Sobic001G260400 Sobic001G260400 Sobic003G366500--Sobic001G260400 Sobic007G183700 Sobic007G183700 Sobic003G366500--Sobic007G183700 Sobic006G249700 Sobic006G249700 Sobic003G366500--Sobic006G249700 Sobic007G026300 Sobic007G026300 Sobic003G366500--Sobic007G026300 Sobic003G181800 Sobic003G181800 Sobic003G366500--Sobic003G181800 Sobic004G274200 Sobic004G274200 Sobic006G182200--Sobic004G274200 Sobic001G473600 Sobic001G473600 Sobic006G182200--Sobic001G473600 Sobic001G016000 Sobic001G016000 Sobic006G182200--Sobic001G016000 Sobic004G353000 Sobic004G353000 Sobic006G182200--Sobic004G353000 Sobic006G182200--Sobic001G360200 Sobic010G116600 Sobic010G116600 Sobic006G182200--Sobic010G116600 Sobic006G182200--Sobic001G466700 Sobic004G339100 Sobic004G339100 Sobic006G182200--Sobic004G339100 Sobic002G283600 Sobic002G283600 Sobic006G182200--Sobic002G283600 Sobic006G278700 Sobic006G278700 Sobic001G360200--Sobic006G278700 Sobic004G066200 Sobic004G066200 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic006G252700 Sobic006G252700 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic009G058500 Sobic009G058500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic010G209000--Sobic006G101700 Sobic008G124900 Sobic008G124900 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic007G166400 Sobic007G166400 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300 Sobic009G175300--Sobic001G221500 Sobic001G226000 Sobic001G226000 Sobic009G175300--Sobic001G226000 Sobic009G175300--Sobic007G039400 Sobic001G291800 Sobic001G291800 Sobic009G175300--Sobic001G291800 Sobic001G152000 Sobic001G152000 Sobic009G175300--Sobic001G152000 Sobic009G175300--Sobic007G180100 Sobic004G133700 Sobic004G133700 Sobic009G175300--Sobic004G133700 Sobic006G044600 Sobic006G044600 Sobic009G175300--Sobic006G044600 Sobic004G307500 Sobic004G307500 Sobic009G175300--Sobic004G307500 Sobic007G180100--Sobic001G221500 Sobic007G180100--Sobic009G058500 Sobic004G353200 Sobic004G353200 Sobic007G180100--Sobic004G353200 Sobic007G180100--Sobic006G044600 Sobic007G180100--Sobic001G360200 Sobic007G180100--Sobic009G175300 Sobic002G010300 Sobic002G010300 Sobic007G180100--Sobic002G010300 Sobic001G512300 Sobic001G512300 Sobic007G180100--Sobic001G512300 Sobic007G180100--Sobic006G017000 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic008G047800 Sobic008G047800 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic007G039400--Sobic001G291800 Sobic009G138700 Sobic009G138700 Sobic007G039400--Sobic009G138700 Sobic001G259000 Sobic001G259000 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600
Octagon: transcription factors


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