Gene annotation
Transcriptome id Sobic.009G175300.1
Synonym Sb09g023590
Functional annotation bifunctional aminoacyl-tRNA synthetase, putative, expressed
UniProt C5YZU3
Pfam PF00587 PF03129 PF09180
Panther DB PTHR11451 PTHR11451:SF21
NCBI CDD -
KEGG Orthology K01881; PARS, prolyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006433prolyl-tRNA aminoacylation GO:0005737cytoplasm GO:0004827proline-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT3G62120 : Class II aaRS and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os12g25710.3 : bifunctional aminoacyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a034191 , Zm00025a010112
Brachypodium KQJ86809
Barley HORVU2Hr1G072780.12 , HORVU2Hr1G072780.14 , HORVU2Hr1G072780.8 , HORVU2Hr1G072780.3 , HORVU2Hr1G072780.6 , HORVU2Hr1G072780.7 , HORVU3Hr1G093050.8 , HORVU3Hr1G093050.9 , HORVU3Hr1G093050.5 , HORVU3Hr1G093050.2 , HORVU3Hr1G093050.1 , HORVU3Hr1G093050.6 , HORVU3Hr1G093050.7 , HORVU3Hr1G093050.4 , HORVU3Hr1G093050.3 , HORVU7Hr1G041110.1 , HORVU7Hr1G041110.2 , HORVU2Hr1G072780.11
Wheat TraesCS3B02G455000 , TraesCS3D02G415200 , TraesCS7B02G107300 , TraesCS1B02G342200 , TraesCS7A02G200500 , TraesCS1B02G342200 , TraesCS7D02G203800 , TraesCS1D02G210600 , TraesCS1D02G210600 , TraesCS1D02G210600 , TraesCS3A02G419600 , TraesCS3A02G419600
Populus PNT50443 , PNT50442 , PNT50441 , PNT50440


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cDNA sequences
Sobic.009G175300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G221500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
2 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
3 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
4 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
5 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
6 Sobic.007G180100 bifunctional aminoacyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
7 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
8 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
9 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
10 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
11 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
12 Sobic.004G057100 tubulin-specific chaperone E, putative, expressed -
13 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
14 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
15 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
16 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
17 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
18 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
19 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1


Gene co-expression network
sample Sobic009G175300 Sobic009G175300 Sobic001G221500 Sobic001G221500 Sobic009G175300--Sobic001G221500 Sobic001G226000 Sobic001G226000 Sobic009G175300--Sobic001G226000 Sobic007G039400 Sobic007G039400 Sobic009G175300--Sobic007G039400 Sobic001G291800 Sobic001G291800 Sobic009G175300--Sobic001G291800 Sobic001G152000 Sobic001G152000 Sobic009G175300--Sobic001G152000 Sobic007G180100 Sobic007G180100 Sobic009G175300--Sobic007G180100 Sobic004G133700 Sobic004G133700 Sobic009G175300--Sobic004G133700 Sobic006G044600 Sobic006G044600 Sobic009G175300--Sobic006G044600 Sobic004G307500 Sobic004G307500 Sobic009G175300--Sobic004G307500 Sobic003G366500 Sobic003G366500 Sobic001G221500--Sobic003G366500 Sobic006G182200 Sobic006G182200 Sobic001G221500--Sobic006G182200 Sobic001G360200 Sobic001G360200 Sobic001G221500--Sobic001G360200 Sobic010G209000 Sobic010G209000 Sobic001G221500--Sobic010G209000 Sobic001G221500--Sobic009G175300 Sobic001G221500--Sobic007G180100 Sobic004G356900 Sobic004G356900 Sobic001G221500--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic001G221500--Sobic006G200600 Sobic001G221500--Sobic007G039400 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic004G013600 Sobic004G013600 Sobic001G226000--Sobic004G013600 Sobic007G039400--Sobic001G291800 Sobic009G138700 Sobic009G138700 Sobic007G039400--Sobic009G138700 Sobic001G259000 Sobic001G259000 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic006G183000 Sobic006G183000 Sobic001G152000--Sobic006G183000 Sobic007G180100--Sobic001G221500 Sobic009G058500 Sobic009G058500 Sobic007G180100--Sobic009G058500 Sobic004G353200 Sobic004G353200 Sobic007G180100--Sobic004G353200 Sobic007G180100--Sobic006G044600 Sobic007G180100--Sobic001G360200 Sobic007G180100--Sobic009G175300 Sobic002G010300 Sobic002G010300 Sobic007G180100--Sobic002G010300 Sobic001G512300 Sobic001G512300 Sobic007G180100--Sobic001G512300 Sobic006G017000 Sobic006G017000 Sobic007G180100--Sobic006G017000 Sobic004G133700--Sobic001G291800 Sobic003G083900 Sobic003G083900 Sobic004G133700--Sobic003G083900 Sobic004G133700--Sobic001G226000 Sobic005G025800 Sobic005G025800 Sobic004G133700--Sobic005G025800 Sobic007G119900 Sobic007G119900 Sobic004G133700--Sobic007G119900 Sobic005G199200 Sobic005G199200 Sobic004G133700--Sobic005G199200 Sobic004G133700--Sobic001G168900 Sobic004G133700--Sobic001G152000 Sobic007G183300 Sobic007G183300 Sobic004G133700--Sobic007G183300 Sobic002G341800 Sobic002G341800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic006G044600--Sobic002G077900 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300
Octagon: transcription factors


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