Gene annotation
Transcriptome id Sobic.001G152000.1,Sobic.001G152000.2
Synonym Sb01g013210
Functional annotation elongation factor Tu family protein, putative, expressed
UniProt A0A1B6QJ25 , A0A1B6QJ28
Pfam PF14492 PF03144 PF00679 PF00009
Panther DB PTHR23115 PTHR23115:SF13
NCBI CDD -
KEGG Orthology K14536; ribosome assembly protein 1
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT3G22980 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os03g44780.1 : elongation factor Tu family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007594
Brachypodium KQK13947 , PNT73701
Barley HORVU5Hr1G092260.1 , HORVU5Hr1G092260.2 , HORVU5Hr1G092260.3 , HORVU5Hr1G092260.4
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G152000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268400 expressed protein -
2 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
3 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
4 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
6 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
7 Sobic.001G009800 N-rich protein, putative, expressed -
8 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
9 Sobic.006G183000 RING zinc finger protein, putative, expressed -
10 Sobic.007G119900 signal recognition particle receptor subunit beta, putative, expressed K12272: SRPRB, signal recognition particle receptor subunit beta
11 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
12 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
14 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
15 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
16 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
17 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
18 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
19 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic001G152000 Sobic001G152000 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic006G183000 Sobic006G183000 Sobic001G152000--Sobic006G183000 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic004G074300--Sobic002G268400 Sobic003G119400 Sobic003G119400 Sobic004G074300--Sobic003G119400 Sobic004G074300--Sobic001G152000 Sobic004G074300--Sobic009G033900 Sobic001G263000 Sobic001G263000 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic009G033900--Sobic004G074300 Sobic009G033900--Sobic001G263000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic009G033900--Sobic006G252100 Sobic008G137600 Sobic008G137600 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic006G109700 Sobic006G109700 Sobic001G294900--Sobic006G109700 Sobic002G204000 Sobic002G204000 Sobic004G019600--Sobic002G204000 Sobic001G346300 Sobic001G346300 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic010G220900 Sobic010G220900 Sobic004G019600--Sobic010G220900 Sobic006G087100 Sobic006G087100 Sobic004G019600--Sobic006G087100 Sobic004G019600--Sobic001G152000 Sobic009G258400 Sobic009G258400 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900 Sobic006G252100--Sobic002G268400 Sobic006G252100--Sobic001G152000 Sobic006G252100--Sobic009G033900 Sobic006G216000 Sobic006G216000 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G094600 Sobic006G094600 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic006G252100--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G252100--Sobic001G370300 Sobic010G193800 Sobic010G193800 Sobic001G009800--Sobic010G193800 Sobic001G009800--Sobic001G152000 Sobic001G009800--Sobic006G183000 Sobic001G009800--Sobic002G268400 Sobic001G038100 Sobic001G038100 Sobic001G009800--Sobic001G038100 Sobic001G532100 Sobic001G532100 Sobic001G009800--Sobic001G532100 Sobic004G260400 Sobic004G260400 Sobic001G009800--Sobic004G260400 Sobic001G009800--Sobic003G405700 Sobic009G140700 Sobic009G140700 Sobic001G009800--Sobic009G140700 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic003G405700--Sobic006G183000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic006G183000--Sobic009G050700 Sobic006G183000--Sobic003G405700 Sobic006G183000--Sobic006G094600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.