Gene annotation
Transcriptome id Sobic.006G252100.1
Synonym Sb06g031690
Functional annotation mediator of RNA polymerase II transcription subunit 7, putative, expressed
UniProt C5Y9M6
Pfam PF05983
Panther DB PTHR21428 PTHR21428:SF11
NCBI CDD KOG0570; Transcriptional coactivator
KEGG Orthology K15148; mediator of RNA polymerase II transcription subunit 7
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G03500 : Mediator complex, subunit Med7
RAP-DB (Rice) LOC_Os04g56640.1 : mediator of RNA polymerase II transcription subunit 7, putative, expressed
MaizeGDB (Corn) Zm00025a009433 , Zm00025a057275
Brachypodium KQJ85122 , KQJ85123 , KQJ85121
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G252100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268400 expressed protein -
2 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
3 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
4 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.003G220700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
7 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
8 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
9 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
10 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
11 Sobic.006G183000 RING zinc finger protein, putative, expressed -
12 Sobic.001G329300 expressed protein -
13 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
14 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
15 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
16 Sobic.007G053500 mps one binder kinase activator-like 1A, putative, expressed K06685: MOB1, MOB kinase activator 1
17 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
19 Sobic.002G306400 zinc finger family protein, putative, expressed -
20 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4


Gene co-expression network
sample Sobic006G252100 Sobic006G252100 Sobic002G268400 Sobic002G268400 Sobic006G252100--Sobic002G268400 Sobic001G152000 Sobic001G152000 Sobic006G252100--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic006G252100--Sobic009G033900 Sobic006G216000 Sobic006G216000 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G094600 Sobic006G094600 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic004G074300 Sobic004G074300 Sobic006G252100--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G252100--Sobic001G370300 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic001G152000--Sobic002G268400 Sobic001G152000--Sobic004G074300 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic009G033900--Sobic006G252100 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic002G253100 Sobic002G253100 Sobic006G216000--Sobic002G253100 Sobic003G119400 Sobic003G119400 Sobic006G216000--Sobic003G119400 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic006G216000--Sobic001G152000 Sobic001G296400 Sobic001G296400 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic005G114400 Sobic005G114400 Sobic003G220700--Sobic005G114400 Sobic007G071200 Sobic007G071200 Sobic003G220700--Sobic007G071200 Sobic001G226000 Sobic001G226000 Sobic003G220700--Sobic001G226000 Sobic004G129300 Sobic004G129300 Sobic003G220700--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic003G220700--Sobic007G191700 Sobic010G279700 Sobic010G279700 Sobic003G220700--Sobic010G279700 Sobic003G220700--Sobic002G268400 Sobic003G220700--Sobic006G252100 Sobic002G357100 Sobic002G357100 Sobic003G220700--Sobic002G357100 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic010G251100 Sobic010G251100 Sobic001G226100--Sobic010G251100 Sobic001G402300 Sobic001G402300 Sobic001G226100--Sobic001G402300 Sobic004G141700 Sobic004G141700 Sobic001G226100--Sobic004G141700 Sobic009G232400 Sobic009G232400 Sobic001G226100--Sobic009G232400 Sobic002G306400 Sobic002G306400 Sobic001G226100--Sobic002G306400 Sobic007G118000 Sobic007G118000 Sobic001G226100--Sobic007G118000 Sobic001G226100--Sobic006G252100 Sobic001G512600 Sobic001G512600 Sobic001G226100--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic001G226100--Sobic001G054200 Sobic004G074300--Sobic002G268400 Sobic004G074300--Sobic003G119400 Sobic004G074300--Sobic001G152000 Sobic004G074300--Sobic009G033900 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G370300--Sobic001G285300 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic001G370300--Sobic006G252100 Sobic001G370300--Sobic004G057800
Octagon: transcription factors


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