Gene annotation
Transcriptome id Sobic.002G306400.2,Sobic.002G306400.1,Sobic.002G306400.3
Synonym Sb02g033660
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6QEA4 , A0A1B6QEA8 , A0A1B6QEA6
Pfam PF00641
Panther DB PTHR23111
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G67325 : Ran BP2/NZF zinc finger-like superfamily protein
RAP-DB (Rice) LOC_Os07g30820.2,LOC_Os07g30820.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048089 , Zm00025a014689
Brachypodium KQK16171
Barley HORVU2Hr1G050290.12 , HORVU2Hr1G050290.13 , HORVU2Hr1G050290.10 , HORVU2Hr1G050290.11 , HORVU2Hr1G050290.4 , HORVU2Hr1G050290.5 , HORVU2Hr1G050290.6 , HORVU2Hr1G050290.7 , HORVU2Hr1G050290.1 , HORVU2Hr1G050290.2 , HORVU2Hr1G050290.3 , HORVU2Hr1G050290.9
Wheat TraesCS2D02G239300 , TraesCS2D02G239300 , TraesCS2A02G226400 , TraesCS2A02G226400
Populus -


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cDNA sequences
Sobic.002G306400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268400 expressed protein -
2 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
3 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
4 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
5 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
6 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
7 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
8 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
9 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
10 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
11 Sobic.001G522900 expressed protein -
12 Sobic.006G262900 expressed protein -
13 Sobic.004G141700 expressed protein -
14 Sobic.006G258900 expressed protein -
15 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
16 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
17 Sobic.010G251100 - K03257: translation initiation factor 4A
18 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
19 Sobic.009G232400 expressed protein -
20 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic002G306400 Sobic002G306400 Sobic002G268400 Sobic002G268400 Sobic002G306400--Sobic002G268400 Sobic003G250500 Sobic003G250500 Sobic002G306400--Sobic003G250500 Sobic003G273400 Sobic003G273400 Sobic002G306400--Sobic003G273400 Sobic001G226100 Sobic001G226100 Sobic002G306400--Sobic001G226100 Sobic001G309100 Sobic001G309100 Sobic002G306400--Sobic001G309100 Sobic001G402300 Sobic001G402300 Sobic002G306400--Sobic001G402300 Sobic001G136900 Sobic001G136900 Sobic002G306400--Sobic001G136900 Sobic010G146600 Sobic010G146600 Sobic002G306400--Sobic010G146600 Sobic004G074300 Sobic004G074300 Sobic002G306400--Sobic004G074300 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic008G137600 Sobic008G137600 Sobic003G273400--Sobic008G137600 Sobic001G532100 Sobic001G532100 Sobic003G273400--Sobic001G532100 Sobic001G207500 Sobic001G207500 Sobic003G273400--Sobic001G207500 Sobic003G273400--Sobic002G306400 Sobic001G294900 Sobic001G294900 Sobic003G273400--Sobic001G294900 Sobic002G341800 Sobic002G341800 Sobic003G273400--Sobic002G341800 Sobic006G109700 Sobic006G109700 Sobic003G273400--Sobic006G109700 Sobic003G273400--Sobic002G268400 Sobic002G280600 Sobic002G280600 Sobic003G273400--Sobic002G280600 Sobic010G251100 Sobic010G251100 Sobic001G226100--Sobic010G251100 Sobic001G226100--Sobic001G402300 Sobic004G141700 Sobic004G141700 Sobic001G226100--Sobic004G141700 Sobic009G232400 Sobic009G232400 Sobic001G226100--Sobic009G232400 Sobic001G226100--Sobic002G306400 Sobic007G118000 Sobic007G118000 Sobic001G226100--Sobic007G118000 Sobic001G226100--Sobic006G252100 Sobic001G226100--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic001G226100--Sobic001G054200 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G309100--Sobic010G071200 Sobic003G437500 Sobic003G437500 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic001G402300--Sobic008G137600 Sobic001G402300--Sobic001G226100 Sobic001G402300--Sobic004G141700 Sobic001G402300--Sobic010G251100 Sobic001G402300--Sobic007G118000 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic010G083700 Sobic010G083700 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic010G249300 Sobic010G249300 Sobic010G146600--Sobic010G249300 Sobic003G119400 Sobic003G119400 Sobic010G146600--Sobic003G119400 Sobic004G185600 Sobic004G185600 Sobic010G146600--Sobic004G185600 Sobic010G146600--Sobic003G250500 Sobic002G317300 Sobic002G317300 Sobic010G146600--Sobic002G317300 Sobic001G291100 Sobic001G291100 Sobic010G146600--Sobic001G291100 Sobic010G146600--Sobic001G281600 Sobic009G133400 Sobic009G133400 Sobic010G146600--Sobic009G133400 Sobic010G146600--Sobic010G251100 Sobic004G074300--Sobic002G268400 Sobic004G074300--Sobic003G119400 Sobic004G074300--Sobic001G152000 Sobic004G074300--Sobic009G033900 Sobic001G263000 Sobic001G263000 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500
Octagon: transcription factors


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