Gene annotation
Transcriptome id Sobic.001G522900.1
Synonym Sb01g048740
Functional annotation expressed protein
UniProt C5X005
Pfam -
Panther DB PTHR31965 PTHR31965:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30845 : -
RAP-DB (Rice) LOC_Os03g03530.1 : expressed protein
MaizeGDB (Corn) Zm00025a000358
Brachypodium KQK23883
Barley HORVU4Hr1G083060.5 , HORVU4Hr1G083060.4 , HORVU4Hr1G083060.7 , HORVU4Hr1G083060.6 , HORVU4Hr1G083060.1 , HORVU4Hr1G083060.3 , HORVU4Hr1G083060.2
Wheat TraesCS5A02G491800 , TraesCS4B02G320200 , TraesCS4D02G316700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115900 SAM domain family protein, expressed -
2 Sobic.001G054200 green ripe-like, putative, expressed -
3 Sobic.004G072800 expressed protein -
4 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
5 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.006G258900 expressed protein -
7 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
8 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
9 Sobic.003G071500 geranylgeranyl transferase type-1 subunit beta, putative, expressed K11713: geranylgeranyl transferase type-1 subunit beta
10 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
11 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
13 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
14 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
15 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
16 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
17 Sobic.004G007300 expressed protein -
18 Sobic.005G086500 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
19 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
20 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase


Gene co-expression network
sample Sobic001G522900 Sobic001G522900 Sobic007G115900 Sobic007G115900 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic002G378200 Sobic002G378200 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic006G258900 Sobic006G258900 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic007G118000 Sobic007G118000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic004G316800 Sobic004G316800 Sobic007G115900--Sobic004G316800 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic001G043900 Sobic001G043900 Sobic007G115900--Sobic001G043900 Sobic009G032300 Sobic009G032300 Sobic007G115900--Sobic009G032300 Sobic007G115900--Sobic006G258900 Sobic007G115900--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic007G115900--Sobic004G007300 Sobic003G211700 Sobic003G211700 Sobic007G115900--Sobic003G211700 Sobic010G083700 Sobic010G083700 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic001G067900 Sobic001G067900 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic004G072800--Sobic007G118000 Sobic004G072800--Sobic001G522900 Sobic002G281300 Sobic002G281300 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic006G254600--Sobic008G165000 Sobic006G254600--Sobic006G092800 Sobic006G254600--Sobic002G378200 Sobic008G192000 Sobic008G192000 Sobic006G254600--Sobic008G192000 Sobic006G254600--Sobic002G084300 Sobic006G254600--Sobic001G522900 Sobic004G231400 Sobic004G231400 Sobic006G254600--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic006G254600--Sobic010G071200 Sobic001G085500 Sobic001G085500 Sobic006G254600--Sobic001G085500 Sobic006G258900--Sobic007G115900 Sobic006G258900--Sobic004G007300 Sobic006G258900--Sobic001G522900 Sobic004G350100 Sobic004G350100 Sobic006G258900--Sobic004G350100 Sobic007G205000 Sobic007G205000 Sobic006G258900--Sobic007G205000 Sobic006G258900--Sobic001G043900 Sobic009G194801 Sobic009G194801 Sobic006G258900--Sobic009G194801 Sobic001G390500 Sobic001G390500 Sobic006G258900--Sobic001G390500 Sobic006G258900--Sobic001G056200 Sobic010G243400 Sobic010G243400 Sobic008G165000--Sobic010G243400 Sobic008G165000--Sobic006G254600 Sobic001G489700 Sobic001G489700 Sobic008G165000--Sobic001G489700 Sobic008G165000--Sobic002G378200 Sobic008G165000--Sobic001G085500 Sobic004G094300 Sobic004G094300 Sobic008G165000--Sobic004G094300 Sobic002G040700 Sobic002G040700 Sobic008G165000--Sobic002G040700 Sobic001G512400 Sobic001G512400 Sobic008G165000--Sobic001G512400 Sobic008G165000--Sobic001G522900 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic003G071500--Sobic002G378200 Sobic004G066200 Sobic004G066200 Sobic003G071500--Sobic004G066200 Sobic009G259400 Sobic009G259400 Sobic003G071500--Sobic009G259400 Sobic002G010300 Sobic002G010300 Sobic003G071500--Sobic002G010300 Sobic003G071500--Sobic004G007300 Sobic003G071500--Sobic002G132300 Sobic001G356600 Sobic001G356600 Sobic003G071500--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic003G071500--Sobic009G228700 Sobic003G071500--Sobic001G522900
Octagon: transcription factors


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