Gene annotation
Transcriptome id Sobic.004G316800.1
Synonym ATRPA1A, RPA70A, RPA1A, Sb04g034780, ATRPA70A
Functional annotation RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed
UniProt C5XTK3
Pfam PF01336 PF04057 PF16900 PF08646
Panther DB PTHR23273 PTHR23273:SF15
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology GO:0003676; nucleic acid binding GO:0006260DNA replication GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G06510 : replication protein A 1A
RAP-DB (Rice) LOC_Os02g53680.1 : RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed
MaizeGDB (Corn) Zm00025a033038
Brachypodium KQK01644 , KQK22912
Barley HORVU6Hr1G081140.2 , HORVU6Hr1G081140.3 , HORVU6Hr1G081140.1 , HORVU6Hr1G081140.4 , HORVU6Hr1G081140.5
Wheat TraesCS6B02G366400 , TraesCS6D02G315400 , TraesCS6A02G335700
Populus -


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cDNA sequences
Sobic.004G316800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115900 SAM domain family protein, expressed -
2 Sobic.003G211700 expressed protein -
3 Sobic.001G522900 expressed protein -
4 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
5 Sobic.006G258900 expressed protein -
6 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
7 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
8 Sobic.010G074900 G protein coupled receptor, putative, expressed -
9 Sobic.004G007300 expressed protein -
10 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
11 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
13 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
14 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
15 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
16 Sobic.010G217200 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S
17 Sobic.007G189000 WTG1(Ortholog in rice:Wang et al. (2017))(PubMedID : 31659909)@ubiquitin thioesterase otubain-like, putative, expressed K09602: ubiquitin thioesterase protein OTUB1
18 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
20 Sobic.003G398400 expressed protein -


Gene co-expression network
sample Sobic004G316800 Sobic004G316800 Sobic007G115900 Sobic007G115900 Sobic004G316800--Sobic007G115900 Sobic003G211700 Sobic003G211700 Sobic004G316800--Sobic003G211700 Sobic001G522900 Sobic001G522900 Sobic004G316800--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic004G316800--Sobic006G092800 Sobic006G258900 Sobic006G258900 Sobic004G316800--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic004G316800--Sobic002G378200 Sobic003G374000 Sobic003G374000 Sobic004G316800--Sobic003G374000 Sobic010G074900 Sobic010G074900 Sobic004G316800--Sobic010G074900 Sobic004G007300 Sobic004G007300 Sobic004G316800--Sobic004G007300 Sobic007G115900--Sobic004G316800 Sobic007G115900--Sobic001G522900 Sobic007G115900--Sobic006G092800 Sobic001G043900 Sobic001G043900 Sobic007G115900--Sobic001G043900 Sobic009G032300 Sobic009G032300 Sobic007G115900--Sobic009G032300 Sobic007G115900--Sobic006G258900 Sobic007G115900--Sobic002G378200 Sobic007G115900--Sobic004G007300 Sobic007G115900--Sobic003G211700 Sobic003G211700--Sobic007G115900 Sobic003G211700--Sobic004G316800 Sobic007G053400 Sobic007G053400 Sobic003G211700--Sobic007G053400 Sobic007G158900 Sobic007G158900 Sobic003G211700--Sobic007G158900 Sobic003G113400 Sobic003G113400 Sobic003G211700--Sobic003G113400 Sobic007G212800 Sobic007G212800 Sobic003G211700--Sobic007G212800 Sobic005G178950 Sobic005G178950 Sobic003G211700--Sobic005G178950 Sobic010G048900 Sobic010G048900 Sobic003G211700--Sobic010G048900 Sobic003G131300 Sobic003G131300 Sobic003G211700--Sobic003G131300 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic007G118000 Sobic007G118000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic006G092800--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G092800--Sobic004G345700 Sobic007G088900 Sobic007G088900 Sobic006G092800--Sobic007G088900 Sobic001G056200 Sobic001G056200 Sobic006G092800--Sobic001G056200 Sobic006G128800 Sobic006G128800 Sobic006G092800--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic006G092800--Sobic002G197100 Sobic006G092800--Sobic006G254600 Sobic001G408700 Sobic001G408700 Sobic006G092800--Sobic001G408700 Sobic003G437500 Sobic003G437500 Sobic006G092800--Sobic003G437500 Sobic006G258900--Sobic007G115900 Sobic006G258900--Sobic004G007300 Sobic006G258900--Sobic001G522900 Sobic004G350100 Sobic004G350100 Sobic006G258900--Sobic004G350100 Sobic007G205000 Sobic007G205000 Sobic006G258900--Sobic007G205000 Sobic006G258900--Sobic001G043900 Sobic009G194801 Sobic009G194801 Sobic006G258900--Sobic009G194801 Sobic001G390500 Sobic001G390500 Sobic006G258900--Sobic001G390500 Sobic006G258900--Sobic001G056200 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic003G374000--Sobic007G118000 Sobic009G192000 Sobic009G192000 Sobic003G374000--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic003G374000--Sobic010G205300 Sobic002G268400 Sobic002G268400 Sobic003G374000--Sobic002G268400 Sobic001G341500 Sobic001G341500 Sobic003G374000--Sobic001G341500 Sobic007G167900 Sobic007G167900 Sobic003G374000--Sobic007G167900 Sobic003G338500 Sobic003G338500 Sobic003G374000--Sobic003G338500 Sobic001G428800 Sobic001G428800 Sobic003G374000--Sobic001G428800 Sobic008G137600 Sobic008G137600 Sobic003G374000--Sobic008G137600 Sobic010G074900--Sobic004G345700 Sobic003G205501 Sobic003G205501 Sobic010G074900--Sobic003G205501 Sobic010G074900--Sobic001G408700 Sobic001G193100 Sobic001G193100 Sobic010G074900--Sobic001G193100 Sobic004G084500 Sobic004G084500 Sobic010G074900--Sobic004G084500 Sobic006G091000 Sobic006G091000 Sobic010G074900--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic010G074900--Sobic005G040900 Sobic010G074900--Sobic004G007300 Sobic003G398400 Sobic003G398400 Sobic010G074900--Sobic003G398400 Sobic004G007300--Sobic002G197100 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic006G173100 Sobic006G173100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic004G007300--Sobic001G056200
Octagon: transcription factors


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