Gene annotation
Transcriptome id Sobic.007G115900.2,Sobic.007G115900.4,Sobic.007G115900.3,Sobic.007G115900.6,Sobic.007G115900.5,Sobic.007G115900.1
Synonym Sb07g019200
Functional annotation SAM domain family protein, expressed
UniProt A0A1Z5RAA4 , A0A1Z5R9B4
Pfam PF07647
Panther DB PTHR10627 PTHR10627:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G11890 : Sterile alpha motif (SAM) domain-containing protein
RAP-DB (Rice) LOC_Os08g29100.1 : SAM domain family protein, expressed
MaizeGDB (Corn) Zm00025a029871
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.001G522900 expressed protein -
3 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
4 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
5 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
6 Sobic.006G258900 expressed protein -
7 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
8 Sobic.004G007300 expressed protein -
9 Sobic.003G211700 expressed protein -
10 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
11 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
12 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
13 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
14 Sobic.002G376300 FYVE zinc finger family protein, expressed -
15 Sobic.006G128800 expressed protein -
16 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
17 Sobic.001G281700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
18 Sobic.004G072800 expressed protein -
19 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.010G217200 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S


Gene co-expression network
sample Sobic007G115900 Sobic007G115900 Sobic004G316800 Sobic004G316800 Sobic007G115900--Sobic004G316800 Sobic001G522900 Sobic001G522900 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic001G043900 Sobic001G043900 Sobic007G115900--Sobic001G043900 Sobic009G032300 Sobic009G032300 Sobic007G115900--Sobic009G032300 Sobic006G258900 Sobic006G258900 Sobic007G115900--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic007G115900--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic007G115900--Sobic004G007300 Sobic003G211700 Sobic003G211700 Sobic007G115900--Sobic003G211700 Sobic004G316800--Sobic007G115900 Sobic004G316800--Sobic003G211700 Sobic004G316800--Sobic001G522900 Sobic004G316800--Sobic006G092800 Sobic004G316800--Sobic006G258900 Sobic004G316800--Sobic002G378200 Sobic003G374000 Sobic003G374000 Sobic004G316800--Sobic003G374000 Sobic010G074900 Sobic010G074900 Sobic004G316800--Sobic010G074900 Sobic004G316800--Sobic004G007300 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic007G118000 Sobic007G118000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic006G092800--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G092800--Sobic004G345700 Sobic007G088900 Sobic007G088900 Sobic006G092800--Sobic007G088900 Sobic001G056200 Sobic001G056200 Sobic006G092800--Sobic001G056200 Sobic006G128800 Sobic006G128800 Sobic006G092800--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic006G092800--Sobic002G197100 Sobic006G092800--Sobic006G254600 Sobic001G408700 Sobic001G408700 Sobic006G092800--Sobic001G408700 Sobic003G437500 Sobic003G437500 Sobic006G092800--Sobic003G437500 Sobic001G043900--Sobic007G115900 Sobic009G225200 Sobic009G225200 Sobic001G043900--Sobic009G225200 Sobic001G043900--Sobic006G258900 Sobic005G014950 Sobic005G014950 Sobic001G043900--Sobic005G014950 Sobic003G417900 Sobic003G417900 Sobic001G043900--Sobic003G417900 Sobic001G428400 Sobic001G428400 Sobic001G043900--Sobic001G428400 Sobic009G117300 Sobic009G117300 Sobic001G043900--Sobic009G117300 Sobic009G015800 Sobic009G015800 Sobic001G043900--Sobic009G015800 Sobic001G043900--Sobic002G197100 Sobic010G264400 Sobic010G264400 Sobic009G032300--Sobic010G264400 Sobic006G130200 Sobic006G130200 Sobic009G032300--Sobic006G130200 Sobic009G032300--Sobic006G092800 Sobic010G174800 Sobic010G174800 Sobic009G032300--Sobic010G174800 Sobic009G032300--Sobic006G128800 Sobic009G032300--Sobic002G197100 Sobic009G032300--Sobic007G115900 Sobic001G221100 Sobic001G221100 Sobic009G032300--Sobic001G221100 Sobic007G191100 Sobic007G191100 Sobic009G032300--Sobic007G191100 Sobic006G258900--Sobic007G115900 Sobic006G258900--Sobic004G007300 Sobic006G258900--Sobic001G522900 Sobic004G350100 Sobic004G350100 Sobic006G258900--Sobic004G350100 Sobic007G205000 Sobic007G205000 Sobic006G258900--Sobic007G205000 Sobic006G258900--Sobic001G043900 Sobic009G194801 Sobic009G194801 Sobic006G258900--Sobic009G194801 Sobic001G390500 Sobic001G390500 Sobic006G258900--Sobic001G390500 Sobic006G258900--Sobic001G056200 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic004G007300--Sobic002G197100 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic006G173100 Sobic006G173100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic004G007300--Sobic001G056200 Sobic003G211700--Sobic007G115900 Sobic003G211700--Sobic004G316800 Sobic007G053400 Sobic007G053400 Sobic003G211700--Sobic007G053400 Sobic007G158900 Sobic007G158900 Sobic003G211700--Sobic007G158900 Sobic003G113400 Sobic003G113400 Sobic003G211700--Sobic003G113400 Sobic007G212800 Sobic007G212800 Sobic003G211700--Sobic007G212800 Sobic005G178950 Sobic005G178950 Sobic003G211700--Sobic005G178950 Sobic010G048900 Sobic010G048900 Sobic003G211700--Sobic010G048900 Sobic003G131300 Sobic003G131300 Sobic003G211700--Sobic003G131300
Octagon: transcription factors


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