Gene annotation
Transcriptome id Sobic.006G092800.3,Sobic.006G092800.2
Synonym RPN6, ATS9, Sb06g017780
Functional annotation proteasome subunit, putative, expressed
UniProt A0A1Z5RD40
Pfam PF01399
Panther DB PTHR10678 PTHR10678:SF5
NCBI CDD -
KEGG Orthology K03036; PSMD11, 26S proteasome regulatory subunit N6
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G29150 : non-ATPase subunit 9
RAP-DB (Rice) LOC_Os04g36700.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a011245 , Zm00025a011246 , Zm00025a011239 , Zm00025a025325 , Zm00025a025322
Brachypodium KQJ82819 , KQK21241
Barley HORVU2Hr1G077540.2 , HORVU2Hr1G077540.1 , HORVU2Hr1G064590.1 , HORVU4Hr1G086010.2 , HORVU4Hr1G086010.1
Wheat TraesCS4B02G355700
Populus PNT16906 , PNT06242 , PNT06243 , PNT06241


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cDNA sequences
Sobic.006G092800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G007300 expressed protein -
2 Sobic.004G345700 TBC domain containing protein, expressed -
3 Sobic.007G088900 expressed protein -
4 Sobic.001G056200 expressed protein -
5 Sobic.006G128800 expressed protein -
6 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
7 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
9 Sobic.003G437500 syntaxin 6, putative, expressed -
10 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
11 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
12 Sobic.004G015800 zinc carboxypeptidase family protein, putative, expressed -
13 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
14 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
15 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
16 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
17 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.006G130200 expressed protein -
19 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
20 Sobic.007G115900 SAM domain family protein, expressed -


Gene co-expression network
sample Sobic006G092800 Sobic006G092800 Sobic004G007300 Sobic004G007300 Sobic006G092800--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G092800--Sobic004G345700 Sobic007G088900 Sobic007G088900 Sobic006G092800--Sobic007G088900 Sobic001G056200 Sobic001G056200 Sobic006G092800--Sobic001G056200 Sobic006G128800 Sobic006G128800 Sobic006G092800--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic006G092800--Sobic002G197100 Sobic006G254600 Sobic006G254600 Sobic006G092800--Sobic006G254600 Sobic001G408700 Sobic001G408700 Sobic006G092800--Sobic001G408700 Sobic003G437500 Sobic003G437500 Sobic006G092800--Sobic003G437500 Sobic004G007300--Sobic002G197100 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic004G007300--Sobic006G092800 Sobic004G350100 Sobic004G350100 Sobic004G007300--Sobic004G350100 Sobic006G173100 Sobic006G173100 Sobic004G007300--Sobic006G173100 Sobic004G283000 Sobic004G283000 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic004G007300--Sobic001G056200 Sobic004G345700--Sobic002G197100 Sobic001G514000 Sobic001G514000 Sobic004G345700--Sobic001G514000 Sobic004G345700--Sobic004G007300 Sobic004G345700--Sobic001G408700 Sobic005G154500 Sobic005G154500 Sobic004G345700--Sobic005G154500 Sobic001G176200 Sobic001G176200 Sobic004G345700--Sobic001G176200 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic010G245000 Sobic010G245000 Sobic004G345700--Sobic010G245000 Sobic007G088900--Sobic006G092800 Sobic007G088900--Sobic004G345700 Sobic007G088900--Sobic004G007300 Sobic001G028400 Sobic001G028400 Sobic007G088900--Sobic001G028400 Sobic007G088900--Sobic003G437500 Sobic004G013600 Sobic004G013600 Sobic007G088900--Sobic004G013600 Sobic007G191100 Sobic007G191100 Sobic007G088900--Sobic007G191100 Sobic007G139400 Sobic007G139400 Sobic007G088900--Sobic007G139400 Sobic003G248500 Sobic003G248500 Sobic007G088900--Sobic003G248500 Sobic002G084300 Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic001G056200--Sobic004G263900 Sobic001G056200--Sobic001G408700 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic001G056200--Sobic004G007300 Sobic008G174300 Sobic008G174300 Sobic001G056200--Sobic008G174300 Sobic006G128800--Sobic003G205501 Sobic010G174800 Sobic010G174800 Sobic006G128800--Sobic010G174800 Sobic004G349900 Sobic004G349900 Sobic006G128800--Sobic004G349900 Sobic002G157300 Sobic002G157300 Sobic006G128800--Sobic002G157300 Sobic003G261300 Sobic003G261300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G130200 Sobic006G130200 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic002G197100--Sobic004G345700 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic002G197100--Sobic003G248500 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic008G165000 Sobic008G165000 Sobic006G254600--Sobic008G165000 Sobic006G254600--Sobic006G092800 Sobic002G378200 Sobic002G378200 Sobic006G254600--Sobic002G378200 Sobic008G192000 Sobic008G192000 Sobic006G254600--Sobic008G192000 Sobic006G254600--Sobic002G084300 Sobic001G522900 Sobic001G522900 Sobic006G254600--Sobic001G522900 Sobic004G231400 Sobic004G231400 Sobic006G254600--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic006G254600--Sobic010G071200 Sobic001G085500 Sobic001G085500 Sobic006G254600--Sobic001G085500 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G408700--Sobic001G056200 Sobic007G118200 Sobic007G118200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic001G408700--Sobic002G197100 Sobic001G408700--Sobic004G283000 Sobic001G408700--Sobic010G245000 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic003G437500--Sobic006G092800 Sobic003G437500--Sobic004G013600 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic003G437500--Sobic003G359300
Octagon: transcription factors


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