Gene annotation
Transcriptome id Sobic.003G437500.1
Synonym ATSYP61, SYP61, Sb03g046820, OSM1
Functional annotation syntaxin 6, putative, expressed
UniProt C5XIP8
Pfam PF05739 PF09177
Panther DB PTHR19957 PTHR19957:SF111
NCBI CDD KOG3202; SNARE protein TLG1/Syntaxin 6
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G28490 : syntaxin of plants 61
RAP-DB (Rice) LOC_Os01g73230.1 : syntaxin 6, putative, expressed
MaizeGDB (Corn) Zm00025a053141 , Zm00025a025887
Brachypodium KQK11674
Barley HORVU3Hr1G111910.4 , HORVU3Hr1G111910.2 , HORVU3Hr1G111910.3 , HORVU3Hr1G111910.1
Wheat TraesCS6B02G185000 , TraesCS3B02G577200 , TraesCS2D02G397400 , TraesCS3D02G516200 , TraesCS3A02G508800
Populus -


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cDNA sequences
Sobic.003G437500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
2 Sobic.001G056200 expressed protein -
3 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
4 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
5 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
6 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
7 Sobic.007G088900 expressed protein -
8 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
9 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
10 Sobic.003G093600 methyltransferase, putative, expressed -
11 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
12 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
14 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
15 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
16 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
17 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
18 Sobic.004G007300 expressed protein -
19 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
20 Sobic.002G058300 ES43 protein, putative, expressed -


Gene co-expression network
sample Sobic003G437500 Sobic003G437500 Sobic001G028400 Sobic001G028400 Sobic003G437500--Sobic001G028400 Sobic001G056200 Sobic001G056200 Sobic003G437500--Sobic001G056200 Sobic006G088100 Sobic006G088100 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic004G013600 Sobic004G013600 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic004G263900 Sobic004G263900 Sobic003G437500--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic003G437500--Sobic003G359300 Sobic010G033400 Sobic010G033400 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic002G084300 Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic001G056200--Sobic004G263900 Sobic001G408700 Sobic001G408700 Sobic001G056200--Sobic001G408700 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic001G056200--Sobic003G437500 Sobic001G056200--Sobic006G088100 Sobic004G007300 Sobic004G007300 Sobic001G056200--Sobic004G007300 Sobic008G174300 Sobic008G174300 Sobic001G056200--Sobic008G174300 Sobic006G088100--Sobic001G056200 Sobic006G088100--Sobic004G263900 Sobic006G088100--Sobic003G202800 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G209500 Sobic006G209500 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic003G202800--Sobic006G088100 Sobic001G107500 Sobic001G107500 Sobic003G202800--Sobic001G107500 Sobic004G271900 Sobic004G271900 Sobic003G202800--Sobic004G271900 Sobic008G034600 Sobic008G034600 Sobic003G202800--Sobic008G034600 Sobic003G202800--Sobic003G437500 Sobic003G202800--Sobic006G128800 Sobic002G157300 Sobic002G157300 Sobic003G202800--Sobic002G157300 Sobic007G011400 Sobic007G011400 Sobic003G202800--Sobic007G011400 Sobic007G205800 Sobic007G205800 Sobic003G202800--Sobic007G205800 Sobic006G092800--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G092800--Sobic004G345700 Sobic006G092800--Sobic007G088900 Sobic006G092800--Sobic001G056200 Sobic006G092800--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic006G092800--Sobic002G197100 Sobic006G254600 Sobic006G254600 Sobic006G092800--Sobic006G254600 Sobic006G092800--Sobic001G408700 Sobic006G092800--Sobic003G437500 Sobic004G013600--Sobic001G056200 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic004G013600--Sobic010G211300 Sobic006G248500 Sobic006G248500 Sobic004G013600--Sobic006G248500 Sobic004G013600--Sobic007G205000 Sobic009G030300 Sobic009G030300 Sobic004G013600--Sobic009G030300 Sobic004G013600--Sobic003G437500 Sobic004G013600--Sobic007G118200 Sobic007G088900--Sobic006G092800 Sobic007G088900--Sobic004G345700 Sobic007G088900--Sobic004G007300 Sobic007G088900--Sobic001G028400 Sobic007G088900--Sobic003G437500 Sobic007G088900--Sobic004G013600 Sobic007G191100 Sobic007G191100 Sobic007G088900--Sobic007G191100 Sobic007G139400 Sobic007G139400 Sobic007G088900--Sobic007G139400 Sobic003G248500 Sobic003G248500 Sobic007G088900--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic004G263900--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G263900--Sobic010G071200 Sobic004G263900--Sobic001G056200 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic004G263900--Sobic007G063200 Sobic010G260500 Sobic010G260500 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic004G263900--Sobic002G084300 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G359300--Sobic003G248500 Sobic003G359300--Sobic007G063200 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic003G359300--Sobic001G056200 Sobic002G365100 Sobic002G365100 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300
Octagon: transcription factors


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