Gene annotation
Transcriptome id Sobic.006G088100.1
Synonym Sb06g017370
Functional annotation coiled-coil domain-containing protein 55, putative, expressed
UniProt C5Y8T2
Pfam PF09745
Panther DB PTHR30060 PTHR30060:SF0
NCBI CDD -
KEGG Orthology K13206; coiled-coil domain-containing protein 55
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27285 : Coiled-coil domain-containing protein 55 (DUF2040)
RAP-DB (Rice) LOC_Os04g35910.1 : coiled-coil domain-containing protein 55, putative, expressed
MaizeGDB (Corn) Zm00025a056108
Brachypodium KQJ82752
Barley HORVU3Hr1G029950.4 , HORVU3Hr1G029950.3 , HORVU7Hr1G028720.1 , HORVU2Hr1G076810.2 , HORVU2Hr1G076810.3 , HORVU2Hr1G076810.1
Wheat TraesCS2D02G306900 , TraesCS2A02G308700 , TraesCS2B02G325200
Populus -


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cDNA sequences
Sobic.006G088100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G056200 expressed protein -
2 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
3 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
4 Sobic.003G437500 syntaxin 6, putative, expressed -
5 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
6 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
7 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
8 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
9 Sobic.006G128800 expressed protein -
10 Sobic.004G271900 RMD5 homolog A, putative, expressed -
11 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
12 Sobic.003G093600 methyltransferase, putative, expressed -
13 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
14 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
15 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
16 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
17 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
18 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
19 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
20 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13


Gene co-expression network
sample Sobic006G088100 Sobic006G088100 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G209500 Sobic006G209500 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic002G084300 Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic001G056200--Sobic004G263900 Sobic001G408700 Sobic001G408700 Sobic001G056200--Sobic001G408700 Sobic004G013600 Sobic004G013600 Sobic001G056200--Sobic004G013600 Sobic001G028400 Sobic001G028400 Sobic001G056200--Sobic001G028400 Sobic001G056200--Sobic003G437500 Sobic001G056200--Sobic006G088100 Sobic004G007300 Sobic004G007300 Sobic001G056200--Sobic004G007300 Sobic008G174300 Sobic008G174300 Sobic001G056200--Sobic008G174300 Sobic010G055500 Sobic010G055500 Sobic004G263900--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G263900--Sobic010G071200 Sobic004G263900--Sobic001G056200 Sobic003G359300 Sobic003G359300 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic007G063200 Sobic007G063200 Sobic004G263900--Sobic007G063200 Sobic010G260500 Sobic010G260500 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic004G263900--Sobic002G084300 Sobic003G202800--Sobic006G088100 Sobic001G107500 Sobic001G107500 Sobic003G202800--Sobic001G107500 Sobic004G271900 Sobic004G271900 Sobic003G202800--Sobic004G271900 Sobic008G034600 Sobic008G034600 Sobic003G202800--Sobic008G034600 Sobic003G202800--Sobic003G437500 Sobic003G202800--Sobic006G128800 Sobic002G157300 Sobic002G157300 Sobic003G202800--Sobic002G157300 Sobic007G011400 Sobic007G011400 Sobic003G202800--Sobic007G011400 Sobic007G205800 Sobic007G205800 Sobic003G202800--Sobic007G205800 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic003G437500--Sobic006G088100 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300 Sobic010G026400 Sobic010G026400 Sobic003G261300--Sobic010G026400 Sobic003G261300--Sobic002G157300 Sobic002G365100 Sobic002G365100 Sobic003G261300--Sobic002G365100 Sobic003G261300--Sobic006G128800 Sobic003G220200 Sobic003G220200 Sobic003G261300--Sobic003G220200 Sobic003G012500 Sobic003G012500 Sobic003G261300--Sobic003G012500 Sobic003G261300--Sobic007G205800 Sobic004G349900 Sobic004G349900 Sobic003G261300--Sobic004G349900 Sobic003G261300--Sobic006G088100 Sobic001G478300 Sobic001G478300 Sobic006G209500--Sobic001G478300 Sobic006G209500--Sobic004G271900 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic009G117400 Sobic009G117400 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic006G209500--Sobic007G205800 Sobic007G104800 Sobic007G104800 Sobic001G119300--Sobic007G104800 Sobic007G200600 Sobic007G200600 Sobic001G119300--Sobic007G200600 Sobic007G026300 Sobic007G026300 Sobic001G119300--Sobic007G026300 Sobic001G119300--Sobic002G350300 Sobic001G119300--Sobic006G088100 Sobic009G205200 Sobic009G205200 Sobic001G119300--Sobic009G205200 Sobic002G200100 Sobic002G200100 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic008G179700 Sobic008G179700 Sobic002G350300--Sobic008G179700 Sobic002G350300--Sobic009G205200 Sobic009G179700 Sobic009G179700 Sobic002G350300--Sobic009G179700 Sobic002G350300--Sobic001G107500 Sobic001G512700 Sobic001G512700 Sobic002G350300--Sobic001G512700 Sobic007G132400 Sobic007G132400 Sobic002G350300--Sobic007G132400 Sobic010G028300 Sobic010G028300 Sobic002G350300--Sobic010G028300 Sobic002G350300--Sobic001G119300 Sobic002G350300--Sobic006G088100 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic010G174800 Sobic010G174800 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic006G128800--Sobic003G248500 Sobic006G130200 Sobic006G130200 Sobic006G128800--Sobic006G130200 Sobic001G514000 Sobic001G514000 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500
Octagon: transcription factors


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