Gene annotation
Transcriptome id Sobic.002G272800.1,Sobic.002G272800.2
Synonym Sb02g030650
Functional annotation mediator of RNA polymerase II transcription subunit 10, putative, expressed
UniProt C5X656
Pfam PF09748
Panther DB PTHR13345
NCBI CDD KOG3046; Transcription factor, subunit of SRB subcomplex of RNA polymerase II
KEGG Orthology K15151; MED10, mediator of RNA polymerase II transcription subunit 10
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT1G26665 : Mediator complex, subunit Med10
RAP-DB (Rice) LOC_Os09g35920.2 : mediator of RNA polymerase II transcription subunit 10, putative, expressed
MaizeGDB (Corn) Zm00025a047755 , Zm00025a014412
Brachypodium KQJ91149
Barley HORVU3Hr1G091500.2 , HORVU1Hr1G088570.2 , HORVU1Hr1G088570.1 , HORVU3Hr1G091500.1 , HORVU1Hr1G009570.1 , HORVU1Hr1G080310.1 , HORVU6Hr1G058080.1 , HORVU6Hr1G058080.2 , HORVU7Hr1G090940.1 , HORVU7Hr1G090940.3 , HORVU7Hr1G090940.2 , HORVU7Hr1G090940.4 , HORVU5Hr1G081120.3 , HORVU5Hr1G081120.2 , HORVU5Hr1G081120.1 , HORVU5Hr1G081120.7 , HORVU5Hr1G081120.6 , HORVU5Hr1G081120.5 , HORVU5Hr1G081120.4 , HORVU5Hr1G081120.9 , HORVU5Hr1G081120.8 , HORVU5Hr1G002360.4 , HORVU5Hr1G002360.1 , HORVU5Hr1G002360.2 , HORVU5Hr1G002360.3
Wheat TraesCS3D02G404900 , TraesCS5D02G323000 , TraesCS3B02G443300 , TraesCS3B02G443300 , TraesCS3A02G410200 , TraesCS3B02G443600 , TraesCS5B02G317300 , TraesCS5A02G316700
Populus -


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cDNA sequences
Sobic.002G272800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
2 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
3 Sobic.006G109300 protein binding protein, putative, expressed -
4 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
5 Sobic.003G437500 syntaxin 6, putative, expressed -
6 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
8 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
9 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
10 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
11 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
12 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
13 Sobic.003G093600 methyltransferase, putative, expressed -
14 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
15 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
16 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
17 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
18 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
19 Sobic.010G269600 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
20 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -


Gene co-expression network
sample Sobic002G272800 Sobic002G272800 Sobic004G150400 Sobic004G150400 Sobic002G272800--Sobic004G150400 Sobic006G088100 Sobic006G088100 Sobic002G272800--Sobic006G088100 Sobic006G109300 Sobic006G109300 Sobic002G272800--Sobic006G109300 Sobic003G074000 Sobic003G074000 Sobic002G272800--Sobic003G074000 Sobic003G437500 Sobic003G437500 Sobic002G272800--Sobic003G437500 Sobic004G119000 Sobic004G119000 Sobic002G272800--Sobic004G119000 Sobic001G028400 Sobic001G028400 Sobic002G272800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic002G272800--Sobic010G033400 Sobic001G309100 Sobic001G309100 Sobic002G272800--Sobic001G309100 Sobic004G150400--Sobic004G119000 Sobic010G055500 Sobic010G055500 Sobic004G150400--Sobic010G055500 Sobic007G205800 Sobic007G205800 Sobic004G150400--Sobic007G205800 Sobic004G150400--Sobic002G272800 Sobic010G071200 Sobic010G071200 Sobic004G150400--Sobic010G071200 Sobic004G150400--Sobic001G028400 Sobic004G150400--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic004G150400--Sobic003G093600 Sobic004G150400--Sobic006G109300 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G209500 Sobic006G209500 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic006G109300--Sobic010G055500 Sobic006G109300--Sobic010G071200 Sobic006G109300--Sobic004G150400 Sobic006G109300--Sobic010G033400 Sobic002G365100 Sobic002G365100 Sobic006G109300--Sobic002G365100 Sobic008G142700 Sobic008G142700 Sobic006G109300--Sobic008G142700 Sobic001G131800 Sobic001G131800 Sobic006G109300--Sobic001G131800 Sobic007G063200 Sobic007G063200 Sobic006G109300--Sobic007G063200 Sobic006G109300--Sobic002G272800 Sobic010G269600 Sobic010G269600 Sobic003G074000--Sobic010G269600 Sobic003G074000--Sobic002G272800 Sobic005G162600 Sobic005G162600 Sobic003G074000--Sobic005G162600 Sobic003G074000--Sobic001G309100 Sobic002G362300 Sobic002G362300 Sobic003G074000--Sobic002G362300 Sobic003G359300 Sobic003G359300 Sobic003G074000--Sobic003G359300 Sobic003G074000--Sobic007G063200 Sobic003G074000--Sobic003G437500 Sobic002G095700 Sobic002G095700 Sobic003G074000--Sobic002G095700 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic003G437500--Sobic006G088100 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic004G013600 Sobic004G013600 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300 Sobic004G119000--Sobic004G150400 Sobic010G280100 Sobic010G280100 Sobic004G119000--Sobic010G280100 Sobic001G291100 Sobic001G291100 Sobic004G119000--Sobic001G291100 Sobic003G185200 Sobic003G185200 Sobic004G119000--Sobic003G185200 Sobic004G119000--Sobic002G272800 Sobic009G087800 Sobic009G087800 Sobic004G119000--Sobic009G087800 Sobic010G268300 Sobic010G268300 Sobic004G119000--Sobic010G268300 Sobic004G119000--Sobic002G365100 Sobic004G119000--Sobic007G205800 Sobic001G028400--Sobic010G033400 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic010G033400--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic010G033400--Sobic008G174300 Sobic009G198100 Sobic009G198100 Sobic010G033400--Sobic009G198100 Sobic004G350100 Sobic004G350100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic003G081000 Sobic003G081000 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic001G309100--Sobic010G071200 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100
Octagon: transcription factors


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