Gene annotation
Transcriptome id Sobic.002G365100.2,Sobic.002G365100.1
Synonym Sb02g038420
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QFC2
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G04500 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g45240.1,LOC_Os08g45240.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015104 , Zm00025a048665
Brachypodium KQJ94726
Barley HORVU7Hr1G060990.1 , HORVU7Hr1G060990.3 , HORVU7Hr1G060990.2
Wheat TraesCS7A02G283200 , TraesCS7D02G281800 , TraesCS7B02G177300
Populus -


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cDNA sequences
Sobic.002G365100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
2 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
3 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
5 Sobic.004G246700 zinc finger family protein, putative, expressed -
6 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
7 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
8 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
9 Sobic.006G128800 expressed protein -
10 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
11 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
12 Sobic.006G109300 protein binding protein, putative, expressed -
13 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
14 Sobic.003G205501 - -
15 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
16 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
17 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
18 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
19 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
20 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G365100 Sobic002G365100 Sobic003G185200 Sobic003G185200 Sobic002G365100--Sobic003G185200 Sobic003G261300 Sobic003G261300 Sobic002G365100--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic002G365100--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic002G365100--Sobic003G359300 Sobic004G246700 Sobic004G246700 Sobic002G365100--Sobic004G246700 Sobic010G055500 Sobic010G055500 Sobic002G365100--Sobic010G055500 Sobic010G174800 Sobic010G174800 Sobic002G365100--Sobic010G174800 Sobic001G028400 Sobic001G028400 Sobic002G365100--Sobic001G028400 Sobic006G128800 Sobic006G128800 Sobic002G365100--Sobic006G128800 Sobic003G185200--Sobic002G365100 Sobic003G185200--Sobic010G174800 Sobic003G185200--Sobic003G248500 Sobic010G202600 Sobic010G202600 Sobic003G185200--Sobic010G202600 Sobic003G185200--Sobic003G261300 Sobic010G000700 Sobic010G000700 Sobic003G185200--Sobic010G000700 Sobic003G185200--Sobic006G128800 Sobic004G263900 Sobic004G263900 Sobic003G185200--Sobic004G263900 Sobic003G336800 Sobic003G336800 Sobic003G185200--Sobic003G336800 Sobic010G026400 Sobic010G026400 Sobic003G261300--Sobic010G026400 Sobic002G157300 Sobic002G157300 Sobic003G261300--Sobic002G157300 Sobic003G261300--Sobic002G365100 Sobic003G261300--Sobic006G128800 Sobic003G220200 Sobic003G220200 Sobic003G261300--Sobic003G220200 Sobic003G012500 Sobic003G012500 Sobic003G261300--Sobic003G012500 Sobic007G205800 Sobic007G205800 Sobic003G261300--Sobic007G205800 Sobic004G349900 Sobic004G349900 Sobic003G261300--Sobic004G349900 Sobic006G088100 Sobic006G088100 Sobic003G261300--Sobic006G088100 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic003G248500--Sobic006G128800 Sobic010G033400 Sobic010G033400 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G359300--Sobic003G248500 Sobic007G063200 Sobic007G063200 Sobic003G359300--Sobic007G063200 Sobic003G359300--Sobic001G028400 Sobic008G174300 Sobic008G174300 Sobic003G359300--Sobic008G174300 Sobic001G056200 Sobic001G056200 Sobic003G359300--Sobic001G056200 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300 Sobic004G246700--Sobic004G349900 Sobic004G246700--Sobic002G365100 Sobic002G259800 Sobic002G259800 Sobic004G246700--Sobic002G259800 Sobic008G127400 Sobic008G127400 Sobic004G246700--Sobic008G127400 Sobic003G241200 Sobic003G241200 Sobic004G246700--Sobic003G241200 Sobic004G246700--Sobic010G202600 Sobic004G096500 Sobic004G096500 Sobic004G246700--Sobic004G096500 Sobic002G320500 Sobic002G320500 Sobic004G246700--Sobic002G320500 Sobic002G034600 Sobic002G034600 Sobic004G246700--Sobic002G034600 Sobic010G071200 Sobic010G071200 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic001G149700 Sobic001G149700 Sobic010G055500--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G055500--Sobic004G231400 Sobic001G512900 Sobic001G512900 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic010G055500--Sobic001G390500 Sobic008G142700 Sobic008G142700 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400 Sobic010G174800--Sobic003G248500 Sobic010G174800--Sobic006G128800 Sobic010G174800--Sobic003G185200 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic010G174800--Sobic003G336800 Sobic010G174800--Sobic004G263900 Sobic010G174800--Sobic001G390500 Sobic010G174800--Sobic001G028400 Sobic001G028400--Sobic010G033400 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G128800--Sobic006G130200 Sobic001G514000 Sobic001G514000 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500
Octagon: transcription factors


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