Gene annotation
Transcriptome id Sobic.010G000700.1
Synonym Sb10g000250
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z218
Pfam PF13639 PF14369
Panther DB PTHR22763 PTHR22763:SF5
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G19950 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g01200.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004962 , Zm00025a050356
Brachypodium KQJ97203
Barley -
Wheat TraesCS4A02G499200
Populus -


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cDNA sequences
Sobic.010G000700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G269600 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
2 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
3 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
5 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
6 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
8 Sobic.006G109300 protein binding protein, putative, expressed -
9 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
10 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
11 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
12 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
14 Sobic.008G073000 expressed protein -
15 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
17 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
18 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
19 Sobic.003G093600 methyltransferase, putative, expressed -
20 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -


Gene co-expression network
sample Sobic010G000700 Sobic010G000700 Sobic010G269600 Sobic010G269600 Sobic010G000700--Sobic010G269600 Sobic003G185200 Sobic003G185200 Sobic010G000700--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic010G000700--Sobic002G365100 Sobic010G055500 Sobic010G055500 Sobic010G000700--Sobic010G055500 Sobic004G150400 Sobic004G150400 Sobic010G000700--Sobic004G150400 Sobic003G248500 Sobic003G248500 Sobic010G000700--Sobic003G248500 Sobic008G034600 Sobic008G034600 Sobic010G000700--Sobic008G034600 Sobic006G109300 Sobic006G109300 Sobic010G000700--Sobic006G109300 Sobic002G061400 Sobic002G061400 Sobic010G000700--Sobic002G061400 Sobic005G229000 Sobic005G229000 Sobic010G269600--Sobic005G229000 Sobic010G269600--Sobic010G000700 Sobic003G074000 Sobic003G074000 Sobic010G269600--Sobic003G074000 Sobic002G045400 Sobic002G045400 Sobic010G269600--Sobic002G045400 Sobic010G269600--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic010G269600--Sobic003G359300 Sobic010G202600 Sobic010G202600 Sobic010G269600--Sobic010G202600 Sobic010G174800 Sobic010G174800 Sobic010G269600--Sobic010G174800 Sobic002G362300 Sobic002G362300 Sobic010G269600--Sobic002G362300 Sobic003G185200--Sobic002G365100 Sobic003G185200--Sobic010G174800 Sobic003G185200--Sobic003G248500 Sobic003G185200--Sobic010G202600 Sobic003G261300 Sobic003G261300 Sobic003G185200--Sobic003G261300 Sobic003G185200--Sobic010G000700 Sobic006G128800 Sobic006G128800 Sobic003G185200--Sobic006G128800 Sobic004G263900 Sobic004G263900 Sobic003G185200--Sobic004G263900 Sobic003G336800 Sobic003G336800 Sobic003G185200--Sobic003G336800 Sobic002G365100--Sobic003G185200 Sobic002G365100--Sobic003G261300 Sobic002G365100--Sobic003G248500 Sobic002G365100--Sobic003G359300 Sobic004G246700 Sobic004G246700 Sobic002G365100--Sobic004G246700 Sobic002G365100--Sobic010G055500 Sobic002G365100--Sobic010G174800 Sobic001G028400 Sobic001G028400 Sobic002G365100--Sobic001G028400 Sobic002G365100--Sobic006G128800 Sobic010G071200 Sobic010G071200 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic001G149700 Sobic001G149700 Sobic010G055500--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G055500--Sobic004G231400 Sobic001G512900 Sobic001G512900 Sobic010G055500--Sobic001G512900 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic008G142700 Sobic008G142700 Sobic010G055500--Sobic008G142700 Sobic010G055500--Sobic004G150400 Sobic004G119000 Sobic004G119000 Sobic004G150400--Sobic004G119000 Sobic004G150400--Sobic010G055500 Sobic007G205800 Sobic007G205800 Sobic004G150400--Sobic007G205800 Sobic002G272800 Sobic002G272800 Sobic004G150400--Sobic002G272800 Sobic004G150400--Sobic010G071200 Sobic004G150400--Sobic001G028400 Sobic006G088100 Sobic006G088100 Sobic004G150400--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic004G150400--Sobic003G093600 Sobic004G150400--Sobic006G109300 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic003G248500--Sobic010G174800 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic003G248500--Sobic006G128800 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic009G022200 Sobic009G022200 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic006G109300--Sobic010G055500 Sobic006G109300--Sobic010G071200 Sobic006G109300--Sobic004G150400 Sobic010G033400 Sobic010G033400 Sobic006G109300--Sobic010G033400 Sobic006G109300--Sobic002G365100 Sobic006G109300--Sobic008G142700 Sobic001G131800 Sobic001G131800 Sobic006G109300--Sobic001G131800 Sobic007G063200 Sobic007G063200 Sobic006G109300--Sobic007G063200 Sobic006G109300--Sobic002G272800 Sobic008G129700 Sobic008G129700 Sobic002G061400--Sobic008G129700 Sobic002G061400--Sobic003G336800 Sobic002G061400--Sobic002G421700 Sobic010G199800 Sobic010G199800 Sobic002G061400--Sobic010G199800 Sobic002G061400--Sobic008G034600 Sobic008G116500 Sobic008G116500 Sobic002G061400--Sobic008G116500 Sobic002G297800 Sobic002G297800 Sobic002G061400--Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G061400--Sobic002G049000 Sobic002G061400--Sobic008G117200
Octagon: transcription factors


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