Gene annotation
Transcriptome id Sobic.010G269600.2,Sobic.010G269600.1
Synonym
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A194YMT5 , A0A1W0VV56
Pfam PF00076
Panther DB PTHR15241
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily KOG0107Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology K12897; transformer-2 protein
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G35785 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g50890.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a018511
Brachypodium -
Barley HORVU7Hr1G118650.8 , HORVU7Hr1G118650.9 , HORVU7Hr1G118650.2 , HORVU7Hr1G118650.3 , HORVU7Hr1G118650.1 , HORVU7Hr1G118650.6 , HORVU7Hr1G118650.7 , HORVU7Hr1G118650.4 , HORVU7Hr1G118650.5 , HORVU7Hr1G118650.10 , HORVU7Hr1G118650.11 , HORVU7Hr1G118650.12 , HORVU7Hr1G118650.13 , HORVU7Hr1G118650.14 , HORVU7Hr1G118650.15
Wheat -
Populus -


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cDNA sequences
Sobic.010G269600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G229000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
2 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
3 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
4 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
7 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
8 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
9 Sobic.002G362300 prefoldin, putative, expressed -
10 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
11 Sobic.010G045600 G-patch domain containing protein, expressed K12840: RBM17, splicing factor 45
12 Sobic.007G130300 ES43 protein, putative, expressed -
13 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
14 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
15 Sobic.006G109300 protein binding protein, putative, expressed -
16 Sobic.008G073000 expressed protein -
17 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
18 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
19 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10


Gene co-expression network
sample Sobic010G269600 Sobic010G269600 Sobic005G229000 Sobic005G229000 Sobic010G269600--Sobic005G229000 Sobic010G000700 Sobic010G000700 Sobic010G269600--Sobic010G000700 Sobic003G074000 Sobic003G074000 Sobic010G269600--Sobic003G074000 Sobic002G045400 Sobic002G045400 Sobic010G269600--Sobic002G045400 Sobic003G248500 Sobic003G248500 Sobic010G269600--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic010G269600--Sobic003G359300 Sobic010G202600 Sobic010G202600 Sobic010G269600--Sobic010G202600 Sobic010G174800 Sobic010G174800 Sobic010G269600--Sobic010G174800 Sobic002G362300 Sobic002G362300 Sobic010G269600--Sobic002G362300 Sobic005G229000--Sobic010G269600 Sobic004G077000 Sobic004G077000 Sobic005G229000--Sobic004G077000 Sobic005G229000--Sobic002G362300 Sobic009G044900 Sobic009G044900 Sobic005G229000--Sobic009G044900 Sobic005G229000--Sobic003G074000 Sobic005G009200 Sobic005G009200 Sobic005G229000--Sobic005G009200 Sobic004G211400 Sobic004G211400 Sobic005G229000--Sobic004G211400 Sobic002G157200 Sobic002G157200 Sobic005G229000--Sobic002G157200 Sobic007G130300 Sobic007G130300 Sobic005G229000--Sobic007G130300 Sobic010G000700--Sobic010G269600 Sobic003G185200 Sobic003G185200 Sobic010G000700--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic010G000700--Sobic002G365100 Sobic010G055500 Sobic010G055500 Sobic010G000700--Sobic010G055500 Sobic004G150400 Sobic004G150400 Sobic010G000700--Sobic004G150400 Sobic010G000700--Sobic003G248500 Sobic008G034600 Sobic008G034600 Sobic010G000700--Sobic008G034600 Sobic006G109300 Sobic006G109300 Sobic010G000700--Sobic006G109300 Sobic002G061400 Sobic002G061400 Sobic010G000700--Sobic002G061400 Sobic003G074000--Sobic010G269600 Sobic002G272800 Sobic002G272800 Sobic003G074000--Sobic002G272800 Sobic005G162600 Sobic005G162600 Sobic003G074000--Sobic005G162600 Sobic001G309100 Sobic001G309100 Sobic003G074000--Sobic001G309100 Sobic003G074000--Sobic002G362300 Sobic003G074000--Sobic003G359300 Sobic007G063200 Sobic007G063200 Sobic003G074000--Sobic007G063200 Sobic003G437500 Sobic003G437500 Sobic003G074000--Sobic003G437500 Sobic002G095700 Sobic002G095700 Sobic003G074000--Sobic002G095700 Sobic008G073000 Sobic008G073000 Sobic002G045400--Sobic008G073000 Sobic003G355000 Sobic003G355000 Sobic002G045400--Sobic003G355000 Sobic003G433500 Sobic003G433500 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic008G101800 Sobic008G101800 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic002G045400--Sobic010G202600 Sobic005G030300 Sobic005G030300 Sobic002G045400--Sobic005G030300 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic006G128800 Sobic006G128800 Sobic003G248500--Sobic006G128800 Sobic010G033400 Sobic010G033400 Sobic003G359300--Sobic010G033400 Sobic004G263900 Sobic004G263900 Sobic003G359300--Sobic004G263900 Sobic003G359300--Sobic003G248500 Sobic003G359300--Sobic007G063200 Sobic001G028400 Sobic001G028400 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic001G056200 Sobic001G056200 Sobic003G359300--Sobic001G056200 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300 Sobic007G111100 Sobic007G111100 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic001G131800 Sobic001G131800 Sobic010G202600--Sobic001G131800 Sobic010G202600--Sobic003G185200 Sobic003G205501 Sobic003G205501 Sobic010G202600--Sobic003G205501 Sobic006G267300 Sobic006G267300 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic010G202600--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic010G202600--Sobic003G081000 Sobic010G174800--Sobic003G248500 Sobic010G174800--Sobic006G128800 Sobic010G174800--Sobic003G185200 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic003G336800 Sobic003G336800 Sobic010G174800--Sobic003G336800 Sobic010G174800--Sobic004G263900 Sobic010G174800--Sobic001G390500 Sobic010G174800--Sobic001G028400 Sobic002G362300--Sobic005G009200 Sobic001G371000 Sobic001G371000 Sobic002G362300--Sobic001G371000 Sobic002G362300--Sobic003G433500 Sobic002G362300--Sobic005G229000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G362300--Sobic002G095700 Sobic002G362300--Sobic005G030300 Sobic002G362300--Sobic009G044900
Octagon: transcription factors


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