Gene annotation
Transcriptome id Sobic.010G045600.1
Synonym Sb10g003990, DRT111
Functional annotation G-patch domain containing protein, expressed
UniProt C5Z4F1
Pfam PF01585
Panther DB PTHR13288 PTHR13288:SF8
NCBI CDD KOG1996; mRNA splicing factor
KEGG Orthology K12840; RBM17, splicing factor 45
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G30480 : D111/G-patch domain-containing protein
RAP-DB (Rice) LOC_Os01g34190.1 : G-patch domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047310 , Zm00025a049973
Brachypodium KQK23577
Barley HORVU3Hr1G015610.2
Wheat TraesCS3D02G087100 , TraesCS3A02G086900 , TraesCS3B02G102300
Populus -


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cDNA sequences
Sobic.010G045600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G269600 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
2 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
3 Sobic.006G109300 protein binding protein, putative, expressed -
4 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
5 Sobic.001G022100 expressed protein -
6 Sobic.008G165700 expressed protein -
7 Sobic.009G137800 expressed protein -
8 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
9 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
10 Sobic.001G131800 expressed protein K15186: ELL-associated factor
11 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
12 Sobic.006G266600 MYB_Al protein, putative, expressed -
13 Sobic.002G077200 expressed protein -
14 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
15 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
16 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
17 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
18 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
19 Sobic.002G346900 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
20 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7


Gene co-expression network
sample Sobic010G045600 Sobic010G045600 Sobic010G269600 Sobic010G269600 Sobic010G045600--Sobic010G269600 Sobic008G062000 Sobic008G062000 Sobic010G045600--Sobic008G062000 Sobic006G109300 Sobic006G109300 Sobic010G045600--Sobic006G109300 Sobic009G232700 Sobic009G232700 Sobic010G045600--Sobic009G232700 Sobic001G022100 Sobic001G022100 Sobic010G045600--Sobic001G022100 Sobic008G165700 Sobic008G165700 Sobic010G045600--Sobic008G165700 Sobic009G137800 Sobic009G137800 Sobic010G045600--Sobic009G137800 Sobic010G000700 Sobic010G000700 Sobic010G045600--Sobic010G000700 Sobic010G055500 Sobic010G055500 Sobic010G045600--Sobic010G055500 Sobic005G229000 Sobic005G229000 Sobic010G269600--Sobic005G229000 Sobic010G269600--Sobic010G000700 Sobic003G074000 Sobic003G074000 Sobic010G269600--Sobic003G074000 Sobic002G045400 Sobic002G045400 Sobic010G269600--Sobic002G045400 Sobic003G248500 Sobic003G248500 Sobic010G269600--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic010G269600--Sobic003G359300 Sobic010G202600 Sobic010G202600 Sobic010G269600--Sobic010G202600 Sobic010G174800 Sobic010G174800 Sobic010G269600--Sobic010G174800 Sobic002G362300 Sobic002G362300 Sobic010G269600--Sobic002G362300 Sobic006G273200 Sobic006G273200 Sobic008G062000--Sobic006G273200 Sobic004G205600 Sobic004G205600 Sobic008G062000--Sobic004G205600 Sobic001G131800 Sobic001G131800 Sobic008G062000--Sobic001G131800 Sobic003G250500 Sobic003G250500 Sobic008G062000--Sobic003G250500 Sobic010G033400 Sobic010G033400 Sobic008G062000--Sobic010G033400 Sobic008G067600 Sobic008G067600 Sobic008G062000--Sobic008G067600 Sobic008G174300 Sobic008G174300 Sobic008G062000--Sobic008G174300 Sobic007G205800 Sobic007G205800 Sobic008G062000--Sobic007G205800 Sobic007G132400 Sobic007G132400 Sobic008G062000--Sobic007G132400 Sobic006G109300--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic006G109300--Sobic010G071200 Sobic004G150400 Sobic004G150400 Sobic006G109300--Sobic004G150400 Sobic006G109300--Sobic010G033400 Sobic002G365100 Sobic002G365100 Sobic006G109300--Sobic002G365100 Sobic008G142700 Sobic008G142700 Sobic006G109300--Sobic008G142700 Sobic006G109300--Sobic001G131800 Sobic007G063200 Sobic007G063200 Sobic006G109300--Sobic007G063200 Sobic002G272800 Sobic002G272800 Sobic006G109300--Sobic002G272800 Sobic001G107500 Sobic001G107500 Sobic009G232700--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic009G232700--Sobic003G298100 Sobic009G022200 Sobic009G022200 Sobic009G232700--Sobic009G022200 Sobic008G175800 Sobic008G175800 Sobic009G232700--Sobic008G175800 Sobic009G232700--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic009G232700--Sobic001G368400 Sobic009G232700--Sobic001G131800 Sobic003G324000 Sobic003G324000 Sobic009G232700--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic009G232700--Sobic010G056200 Sobic008G025900 Sobic008G025900 Sobic001G022100--Sobic008G025900 Sobic001G022100--Sobic009G137800 Sobic005G096800 Sobic005G096800 Sobic001G022100--Sobic005G096800 Sobic002G400900 Sobic002G400900 Sobic001G022100--Sobic002G400900 Sobic005G139800 Sobic005G139800 Sobic001G022100--Sobic005G139800 Sobic005G221425 Sobic005G221425 Sobic001G022100--Sobic005G221425 Sobic002G224450 Sobic002G224450 Sobic001G022100--Sobic002G224450 Sobic002G166600 Sobic002G166600 Sobic001G022100--Sobic002G166600 Sobic003G185200 Sobic003G185200 Sobic001G022100--Sobic003G185200 Sobic008G165700--Sobic006G273200 Sobic009G233300 Sobic009G233300 Sobic008G165700--Sobic009G233300 Sobic010G268300 Sobic010G268300 Sobic008G165700--Sobic010G268300 Sobic002G187801 Sobic002G187801 Sobic008G165700--Sobic002G187801 Sobic008G165700--Sobic002G365100 Sobic001G191100 Sobic001G191100 Sobic008G165700--Sobic001G191100 Sobic003G123000 Sobic003G123000 Sobic008G165700--Sobic003G123000 Sobic003G018900 Sobic003G018900 Sobic008G165700--Sobic003G018900 Sobic003G000150 Sobic003G000150 Sobic008G165700--Sobic003G000150 Sobic004G153600 Sobic004G153600 Sobic009G137800--Sobic004G153600 Sobic008G189400 Sobic008G189400 Sobic009G137800--Sobic008G189400 Sobic004G267300 Sobic004G267300 Sobic009G137800--Sobic004G267300 Sobic009G137800--Sobic003G185200 Sobic009G137800--Sobic008G025900 Sobic001G424700 Sobic001G424700 Sobic009G137800--Sobic001G424700 Sobic009G087800 Sobic009G087800 Sobic009G137800--Sobic009G087800 Sobic009G137800--Sobic001G022100 Sobic010G260500 Sobic010G260500 Sobic009G137800--Sobic010G260500 Sobic010G000700--Sobic010G269600 Sobic010G000700--Sobic003G185200 Sobic010G000700--Sobic002G365100 Sobic010G000700--Sobic010G055500 Sobic010G000700--Sobic004G150400 Sobic010G000700--Sobic003G248500 Sobic008G034600 Sobic008G034600 Sobic010G000700--Sobic008G034600 Sobic010G000700--Sobic006G109300 Sobic002G061400 Sobic002G061400 Sobic010G000700--Sobic002G061400 Sobic010G055500--Sobic010G071200 Sobic004G263900 Sobic004G263900 Sobic010G055500--Sobic004G263900 Sobic001G149700 Sobic001G149700 Sobic010G055500--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G055500--Sobic004G231400 Sobic001G512900 Sobic001G512900 Sobic010G055500--Sobic001G512900 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic010G055500--Sobic004G150400
Octagon: transcription factors


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