Gene annotation
Transcriptome id Sobic.004G211400.1,Sobic.004G211400.4,Sobic.004G211400.2,Sobic.004G211400.3
Synonym Sb04g025670, serine/arginine-rich (SR) family, sb-RSZ28
Functional annotation Putative splicing factor (PubMedID : 24356560)
splicing factor, arginine/serine-rich 7, putative, expressed
UniProt A0A1Z5RP12 , A0A194YS05 , M1GSA5
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology K12896; splicing factor, arginine/serine-rich 7
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G31580 : serine/arginine-rich 22
RAP-DB (Rice) LOC_Os02g39720.2 : splicing factor, arginine/serine-rich 7, putative, expressed
MaizeGDB (Corn) Zm00025a021215 , Zm00025a031909
Brachypodium KQK00287 , KQK00286 , KQK00285 , PNT69040
Barley -
Wheat TraesCS6A02G219000 , TraesCS6D02G202100 , TraesCS6A02G219000 , TraesCS6B02G248500
Populus -


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cDNA sequences
Sobic.004G211400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
3 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
4 Sobic.002G157200 expressed protein -
5 Sobic.007G224900 RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
6 Sobic.006G191400 - -
7 Sobic.003G258400 splicing factor-related, putative, expressed -
8 Sobic.008G136200 spotted leaf 11, putative, expressed -
9 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
10 Sobic.002G151600 R-interacting factor 1, putative, expressed -
11 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.006G210100 zinc finger domain, LSD1 subclass family protein, expressed -
13 Sobic.002G058300 ES43 protein, putative, expressed -
14 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
15 Sobic.004G271900 RMD5 homolog A, putative, expressed -
16 Sobic.007G094801 - -
17 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -
18 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
19 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
20 Sobic.001G191100 OsFBX157 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic004G211400 Sobic004G211400 Sobic008G034600 Sobic008G034600 Sobic004G211400--Sobic008G034600 Sobic009G022200 Sobic009G022200 Sobic004G211400--Sobic009G022200 Sobic007G205800 Sobic007G205800 Sobic004G211400--Sobic007G205800 Sobic002G157200 Sobic002G157200 Sobic004G211400--Sobic002G157200 Sobic007G224900 Sobic007G224900 Sobic004G211400--Sobic007G224900 Sobic006G191400 Sobic006G191400 Sobic004G211400--Sobic006G191400 Sobic003G258400 Sobic003G258400 Sobic004G211400--Sobic003G258400 Sobic008G136200 Sobic008G136200 Sobic004G211400--Sobic008G136200 Sobic001G428400 Sobic001G428400 Sobic004G211400--Sobic001G428400 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic009G022200--Sobic007G011400 Sobic009G022200--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic009G022200--Sobic003G093600 Sobic009G022200--Sobic008G034600 Sobic009G022200--Sobic004G211400 Sobic009G087800 Sobic009G087800 Sobic009G022200--Sobic009G087800 Sobic009G022200--Sobic004G271900 Sobic008G116500 Sobic008G116500 Sobic009G022200--Sobic008G116500 Sobic009G022200--Sobic003G258400 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic002G157200--Sobic008G034600 Sobic002G157200--Sobic007G224900 Sobic002G157200--Sobic004G211400 Sobic001G045700 Sobic001G045700 Sobic002G157200--Sobic001G045700 Sobic006G210200 Sobic006G210200 Sobic002G157200--Sobic006G210200 Sobic002G049000 Sobic002G049000 Sobic002G157200--Sobic002G049000 Sobic002G157200--Sobic009G022200 Sobic002G157200--Sobic002G421700 Sobic002G061400 Sobic002G061400 Sobic002G157200--Sobic002G061400 Sobic007G224900--Sobic008G034600 Sobic007G224900--Sobic002G157200 Sobic007G224900--Sobic001G045700 Sobic001G179000 Sobic001G179000 Sobic007G224900--Sobic001G179000 Sobic007G224900--Sobic004G211400 Sobic009G059600 Sobic009G059600 Sobic007G224900--Sobic009G059600 Sobic007G224900--Sobic008G117200 Sobic007G224900--Sobic002G049000 Sobic007G224900--Sobic009G022200 Sobic002G330400 Sobic002G330400 Sobic006G191400--Sobic002G330400 Sobic001G303675 Sobic001G303675 Sobic006G191400--Sobic001G303675 Sobic006G191400--Sobic004G211400 Sobic003G163100 Sobic003G163100 Sobic006G191400--Sobic003G163100 Sobic002G209600 Sobic002G209600 Sobic006G191400--Sobic002G209600 Sobic006G191400--Sobic008G136200 Sobic002G151600 Sobic002G151600 Sobic006G191400--Sobic002G151600 Sobic009G045700 Sobic009G045700 Sobic006G191400--Sobic009G045700 Sobic007G052900 Sobic007G052900 Sobic006G191400--Sobic007G052900 Sobic003G258400--Sobic002G077200 Sobic004G256600 Sobic004G256600 Sobic003G258400--Sobic004G256600 Sobic003G258400--Sobic009G087800 Sobic009G231300 Sobic009G231300 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic003G258400--Sobic004G271900 Sobic003G258400--Sobic007G205800 Sobic003G258400--Sobic003G093600 Sobic009G110366 Sobic009G110366 Sobic003G258400--Sobic009G110366 Sobic002G144933 Sobic002G144933 Sobic008G136200--Sobic002G144933 Sobic008G136200--Sobic007G205800 Sobic008G136200--Sobic007G011400 Sobic009G215800 Sobic009G215800 Sobic008G136200--Sobic009G215800 Sobic009G065100 Sobic009G065100 Sobic008G136200--Sobic009G065100 Sobic001G094000 Sobic001G094000 Sobic008G136200--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic008G136200--Sobic002G157000 Sobic003G197800 Sobic003G197800 Sobic008G136200--Sobic003G197800 Sobic008G136200--Sobic009G087800 Sobic004G077000 Sobic004G077000 Sobic001G428400--Sobic004G077000 Sobic009G117300 Sobic009G117300 Sobic001G428400--Sobic009G117300 Sobic001G428400--Sobic004G211400 Sobic001G039700 Sobic001G039700 Sobic001G428400--Sobic001G039700 Sobic004G006300 Sobic004G006300 Sobic001G428400--Sobic004G006300 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic009G117400 Sobic009G117400 Sobic001G428400--Sobic009G117400 Sobic008G136000 Sobic008G136000 Sobic001G428400--Sobic008G136000
Octagon: transcription factors


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