Gene annotation
Transcriptome id Sobic.007G224900.1,Sobic.007G224900.3,Sobic.007G224900.2
Synonym SC35, Sb07g029000, ATSC35
Functional annotation RNA recognition motif containing protein, expressed
UniProt M1H9B0 , M1HAH7 , M1GSB3 , M1H575 , M1HJ21 , M1H571
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF15
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K12891; splicing factor, arginine/serine-rich 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G64200 : ortholog of human splicing factor SC35
RAP-DB (Rice) LOC_Os08g37960.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a033715 , Zm00025a004956
Brachypodium KQJ98744 , KQJ98745 , KQJ98743
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G224900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.002G157200 expressed protein -
3 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
5 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
6 Sobic.009G059600 KIP1, putative, expressed -
7 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
8 Sobic.002G049000 frigida, putative, expressed -
9 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
10 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
11 Sobic.002G177400 expressed protein -
12 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
13 Sobic.002G313300 bromodomain domain containing protein, expressed -
14 Sobic.002G297800 growth regulating factor protein, putative, expressed -
15 Sobic.002G077200 expressed protein -
16 Sobic.007G195400 FHA domain containing protein, putative, expressed -
17 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
18 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
19 Sobic.009G231300 drought induced 19 protein, putative, expressed -
20 Sobic.002G039500 expressed protein -


Gene co-expression network
sample Sobic007G224900 Sobic007G224900 Sobic008G034600 Sobic008G034600 Sobic007G224900--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic007G224900--Sobic002G157200 Sobic001G045700 Sobic001G045700 Sobic007G224900--Sobic001G045700 Sobic001G179000 Sobic001G179000 Sobic007G224900--Sobic001G179000 Sobic004G211400 Sobic004G211400 Sobic007G224900--Sobic004G211400 Sobic009G059600 Sobic009G059600 Sobic007G224900--Sobic009G059600 Sobic008G117200 Sobic008G117200 Sobic007G224900--Sobic008G117200 Sobic002G049000 Sobic002G049000 Sobic007G224900--Sobic002G049000 Sobic009G022200 Sobic009G022200 Sobic007G224900--Sobic009G022200 Sobic007G205800 Sobic007G205800 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic002G157200--Sobic008G034600 Sobic002G157200--Sobic007G224900 Sobic002G157200--Sobic004G211400 Sobic002G157200--Sobic001G045700 Sobic006G210200 Sobic006G210200 Sobic002G157200--Sobic006G210200 Sobic002G157200--Sobic002G049000 Sobic002G157200--Sobic009G022200 Sobic002G157200--Sobic002G421700 Sobic002G061400 Sobic002G061400 Sobic002G157200--Sobic002G061400 Sobic001G045700--Sobic002G157200 Sobic001G045700--Sobic007G224900 Sobic003G185250 Sobic003G185250 Sobic001G045700--Sobic003G185250 Sobic006G006500 Sobic006G006500 Sobic001G045700--Sobic006G006500 Sobic001G045700--Sobic002G049000 Sobic002G060450 Sobic002G060450 Sobic001G045700--Sobic002G060450 Sobic002G050500 Sobic002G050500 Sobic001G045700--Sobic002G050500 Sobic002G297800 Sobic002G297800 Sobic001G045700--Sobic002G297800 Sobic010G208500 Sobic010G208500 Sobic001G045700--Sobic010G208500 Sobic001G179000--Sobic007G224900 Sobic003G380500 Sobic003G380500 Sobic001G179000--Sobic003G380500 Sobic006G149101 Sobic006G149101 Sobic001G179000--Sobic006G149101 Sobic007G195400 Sobic007G195400 Sobic001G179000--Sobic007G195400 Sobic004G349100 Sobic004G349100 Sobic001G179000--Sobic004G349100 Sobic009G183500 Sobic009G183500 Sobic001G179000--Sobic009G183500 Sobic003G074000 Sobic003G074000 Sobic001G179000--Sobic003G074000 Sobic002G221900 Sobic002G221900 Sobic001G179000--Sobic002G221900 Sobic007G023700 Sobic007G023700 Sobic001G179000--Sobic007G023700 Sobic004G211400--Sobic008G034600 Sobic004G211400--Sobic009G022200 Sobic004G211400--Sobic007G205800 Sobic004G211400--Sobic002G157200 Sobic004G211400--Sobic007G224900 Sobic006G191400 Sobic006G191400 Sobic004G211400--Sobic006G191400 Sobic003G258400 Sobic003G258400 Sobic004G211400--Sobic003G258400 Sobic008G136200 Sobic008G136200 Sobic004G211400--Sobic008G136200 Sobic001G428400 Sobic001G428400 Sobic004G211400--Sobic001G428400 Sobic004G164600 Sobic004G164600 Sobic009G059600--Sobic004G164600 Sobic007G099500 Sobic007G099500 Sobic009G059600--Sobic007G099500 Sobic004G212800 Sobic004G212800 Sobic009G059600--Sobic004G212800 Sobic007G073400 Sobic007G073400 Sobic009G059600--Sobic007G073400 Sobic008G068800 Sobic008G068800 Sobic009G059600--Sobic008G068800 Sobic003G128600 Sobic003G128600 Sobic009G059600--Sobic003G128600 Sobic003G424100 Sobic003G424100 Sobic009G059600--Sobic003G424100 Sobic007G142050 Sobic007G142050 Sobic009G059600--Sobic007G142050 Sobic004G076732 Sobic004G076732 Sobic009G059600--Sobic004G076732 Sobic008G117200--Sobic010G263800 Sobic008G117200--Sobic008G034600 Sobic001G094000 Sobic001G094000 Sobic008G117200--Sobic001G094000 Sobic004G088400 Sobic004G088400 Sobic008G117200--Sobic004G088400 Sobic002G177400 Sobic002G177400 Sobic008G117200--Sobic002G177400 Sobic008G117200--Sobic002G421700 Sobic007G116400 Sobic007G116400 Sobic008G117200--Sobic007G116400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic002G049000--Sobic003G346000 Sobic002G049000--Sobic002G297800 Sobic002G090400 Sobic002G090400 Sobic002G049000--Sobic002G090400 Sobic002G049000--Sobic008G068800 Sobic002G049000--Sobic007G011400 Sobic002G049000--Sobic002G061400 Sobic002G049000--Sobic001G094000 Sobic002G049000--Sobic008G034600 Sobic001G394400 Sobic001G394400 Sobic002G049000--Sobic001G394400 Sobic009G022200--Sobic007G011400 Sobic009G022200--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic009G022200--Sobic003G093600 Sobic009G022200--Sobic008G034600 Sobic009G022200--Sobic004G211400 Sobic009G087800 Sobic009G087800 Sobic009G022200--Sobic009G087800 Sobic009G022200--Sobic004G271900 Sobic008G116500 Sobic008G116500 Sobic009G022200--Sobic008G116500 Sobic009G022200--Sobic003G258400
Octagon: transcription factors


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