Gene annotation
Transcriptome id Sobic.001G179000.1,Sobic.001G179000.2
Synonym NRPE6A, NRPB6A, Sb01g015570, NRPD6A
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt A0A1B6QJJ4 , A0A1B6QJK0
Pfam PF01192
Panther DB PTHR10773
NCBI CDD -
KEGG Orthology K03014; RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G51940 : RNA polymerase Rpb6
RAP-DB (Rice) LOC_Os03g38960.1,LOC_Os03g38960.2 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a017352
Brachypodium KQK14317
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G179000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G224900 RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
2 Sobic.003G380500 expressed protein -
3 Sobic.006G149101 - -
4 Sobic.007G195400 FHA domain containing protein, putative, expressed -
5 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
6 Sobic.009G183500 expressed protein -
7 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
8 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
9 Sobic.007G023700 MA3 domain containing protein, expressed -
10 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
11 Sobic.003G437500 syntaxin 6, putative, expressed -
12 Sobic.002G157200 expressed protein -
13 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
14 Sobic.002G362300 prefoldin, putative, expressed -
15 Sobic.002G039500 expressed protein -
16 Sobic.005G229000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
17 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
18 Sobic.010G154150 - -
19 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
20 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2


Gene co-expression network
sample Sobic001G179000 Sobic001G179000 Sobic007G224900 Sobic007G224900 Sobic001G179000--Sobic007G224900 Sobic003G380500 Sobic003G380500 Sobic001G179000--Sobic003G380500 Sobic006G149101 Sobic006G149101 Sobic001G179000--Sobic006G149101 Sobic007G195400 Sobic007G195400 Sobic001G179000--Sobic007G195400 Sobic004G349100 Sobic004G349100 Sobic001G179000--Sobic004G349100 Sobic009G183500 Sobic009G183500 Sobic001G179000--Sobic009G183500 Sobic003G074000 Sobic003G074000 Sobic001G179000--Sobic003G074000 Sobic002G221900 Sobic002G221900 Sobic001G179000--Sobic002G221900 Sobic007G023700 Sobic007G023700 Sobic001G179000--Sobic007G023700 Sobic008G034600 Sobic008G034600 Sobic007G224900--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic007G224900--Sobic002G157200 Sobic001G045700 Sobic001G045700 Sobic007G224900--Sobic001G045700 Sobic007G224900--Sobic001G179000 Sobic004G211400 Sobic004G211400 Sobic007G224900--Sobic004G211400 Sobic009G059600 Sobic009G059600 Sobic007G224900--Sobic009G059600 Sobic008G117200 Sobic008G117200 Sobic007G224900--Sobic008G117200 Sobic002G049000 Sobic002G049000 Sobic007G224900--Sobic002G049000 Sobic009G022200 Sobic009G022200 Sobic007G224900--Sobic009G022200 Sobic006G262600 Sobic006G262600 Sobic003G380500--Sobic006G262600 Sobic002G007200 Sobic002G007200 Sobic003G380500--Sobic002G007200 Sobic003G380500--Sobic001G179000 Sobic002G221700 Sobic002G221700 Sobic003G380500--Sobic002G221700 Sobic007G191100 Sobic007G191100 Sobic003G380500--Sobic007G191100 Sobic009G164900 Sobic009G164900 Sobic003G380500--Sobic009G164900 Sobic004G250700 Sobic004G250700 Sobic003G380500--Sobic004G250700 Sobic003G380500--Sobic007G195400 Sobic007G008800 Sobic007G008800 Sobic003G380500--Sobic007G008800 Sobic006G149101--Sobic001G179000 Sobic006G213100 Sobic006G213100 Sobic006G149101--Sobic006G213100 Sobic006G149101--Sobic003G380500 Sobic006G149101--Sobic007G191100 Sobic006G149101--Sobic007G195400 Sobic006G149101--Sobic004G349100 Sobic006G149101--Sobic006G262600 Sobic010G118700 Sobic010G118700 Sobic006G149101--Sobic010G118700 Sobic003G328800 Sobic003G328800 Sobic006G149101--Sobic003G328800 Sobic003G359300 Sobic003G359300 Sobic007G195400--Sobic003G359300 Sobic004G061900 Sobic004G061900 Sobic007G195400--Sobic004G061900 Sobic007G195400--Sobic008G034600 Sobic007G195400--Sobic007G191100 Sobic006G129700 Sobic006G129700 Sobic007G195400--Sobic006G129700 Sobic003G093600 Sobic003G093600 Sobic007G195400--Sobic003G093600 Sobic001G216600 Sobic001G216600 Sobic007G195400--Sobic001G216600 Sobic002G058300 Sobic002G058300 Sobic007G195400--Sobic002G058300 Sobic003G115100 Sobic003G115100 Sobic007G195400--Sobic003G115100 Sobic003G024800 Sobic003G024800 Sobic004G349100--Sobic003G024800 Sobic001G350501 Sobic001G350501 Sobic004G349100--Sobic001G350501 Sobic004G349100--Sobic001G179000 Sobic009G034400 Sobic009G034400 Sobic004G349100--Sobic009G034400 Sobic001G309100 Sobic001G309100 Sobic004G349100--Sobic001G309100 Sobic003G101300 Sobic003G101300 Sobic004G349100--Sobic003G101300 Sobic003G437500 Sobic003G437500 Sobic004G349100--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic004G349100--Sobic005G000800 Sobic004G349100--Sobic007G195400 Sobic009G183500--Sobic007G023700 Sobic009G183500--Sobic003G093600 Sobic009G183500--Sobic002G221900 Sobic004G188300 Sobic004G188300 Sobic009G183500--Sobic004G188300 Sobic002G039500 Sobic002G039500 Sobic009G183500--Sobic002G039500 Sobic003G034500 Sobic003G034500 Sobic009G183500--Sobic003G034500 Sobic008G126200 Sobic008G126200 Sobic009G183500--Sobic008G126200 Sobic004G143700 Sobic004G143700 Sobic009G183500--Sobic004G143700 Sobic006G257900 Sobic006G257900 Sobic009G183500--Sobic006G257900 Sobic010G269600 Sobic010G269600 Sobic003G074000--Sobic010G269600 Sobic002G272800 Sobic002G272800 Sobic003G074000--Sobic002G272800 Sobic005G162600 Sobic005G162600 Sobic003G074000--Sobic005G162600 Sobic003G074000--Sobic001G309100 Sobic002G362300 Sobic002G362300 Sobic003G074000--Sobic002G362300 Sobic003G074000--Sobic003G359300 Sobic007G063200 Sobic007G063200 Sobic003G074000--Sobic007G063200 Sobic003G074000--Sobic003G437500 Sobic002G095700 Sobic002G095700 Sobic003G074000--Sobic002G095700 Sobic002G221900--Sobic007G023700 Sobic002G108800 Sobic002G108800 Sobic002G221900--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G221900--Sobic007G156500 Sobic003G044900 Sobic003G044900 Sobic002G221900--Sobic003G044900 Sobic002G253500 Sobic002G253500 Sobic002G221900--Sobic002G253500 Sobic001G024200 Sobic001G024200 Sobic002G221900--Sobic001G024200 Sobic002G221900--Sobic002G039500 Sobic002G221900--Sobic004G143700 Sobic003G204000 Sobic003G204000 Sobic002G221900--Sobic003G204000 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300
Octagon: transcription factors


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