Gene annotation
Transcriptome id Sobic.005G229000.2
Synonym Sb05g027700, serine/arginine-rich (SR) family, sb-SCL31, SCL30
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt C5Y8K9 , M1GSB5
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF13
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology K12900; FUS-interacting serine-arginine-rich protein 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G55460 : SC35-like splicing factor 30
RAP-DB (Rice) LOC_Os12g38430.1 : SR repressor protein, putative, expressed
MaizeGDB (Corn) Zm00025a029087
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G229000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G269600 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
2 Sobic.004G077000 expressed protein -
3 Sobic.002G362300 prefoldin, putative, expressed -
4 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
5 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
6 Sobic.005G009200 expressed protein -
7 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
8 Sobic.002G157200 expressed protein -
9 Sobic.007G130300 ES43 protein, putative, expressed -
10 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
11 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
12 Sobic.007G224900 RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
13 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.002G177400 expressed protein -
15 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
16 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
17 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
18 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
19 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
20 Sobic.001G063100 DUF593 domain containing protein, expressed -


Gene co-expression network
sample Sobic005G229000 Sobic005G229000 Sobic010G269600 Sobic010G269600 Sobic005G229000--Sobic010G269600 Sobic004G077000 Sobic004G077000 Sobic005G229000--Sobic004G077000 Sobic002G362300 Sobic002G362300 Sobic005G229000--Sobic002G362300 Sobic009G044900 Sobic009G044900 Sobic005G229000--Sobic009G044900 Sobic003G074000 Sobic003G074000 Sobic005G229000--Sobic003G074000 Sobic005G009200 Sobic005G009200 Sobic005G229000--Sobic005G009200 Sobic004G211400 Sobic004G211400 Sobic005G229000--Sobic004G211400 Sobic002G157200 Sobic002G157200 Sobic005G229000--Sobic002G157200 Sobic007G130300 Sobic007G130300 Sobic005G229000--Sobic007G130300 Sobic010G269600--Sobic005G229000 Sobic010G000700 Sobic010G000700 Sobic010G269600--Sobic010G000700 Sobic010G269600--Sobic003G074000 Sobic002G045400 Sobic002G045400 Sobic010G269600--Sobic002G045400 Sobic003G248500 Sobic003G248500 Sobic010G269600--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic010G269600--Sobic003G359300 Sobic010G202600 Sobic010G202600 Sobic010G269600--Sobic010G202600 Sobic010G174800 Sobic010G174800 Sobic010G269600--Sobic010G174800 Sobic010G269600--Sobic002G362300 Sobic004G077000--Sobic005G229000 Sobic001G428400 Sobic001G428400 Sobic004G077000--Sobic001G428400 Sobic004G077000--Sobic002G362300 Sobic003G442000 Sobic003G442000 Sobic004G077000--Sobic003G442000 Sobic008G034600 Sobic008G034600 Sobic004G077000--Sobic008G034600 Sobic004G077000--Sobic002G157200 Sobic009G225200 Sobic009G225200 Sobic004G077000--Sobic009G225200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900 Sobic002G362300--Sobic005G009200 Sobic001G371000 Sobic001G371000 Sobic002G362300--Sobic001G371000 Sobic003G433500 Sobic003G433500 Sobic002G362300--Sobic003G433500 Sobic002G362300--Sobic005G229000 Sobic008G073000 Sobic008G073000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G095700 Sobic002G095700 Sobic002G362300--Sobic002G095700 Sobic005G030300 Sobic005G030300 Sobic002G362300--Sobic005G030300 Sobic002G362300--Sobic009G044900 Sobic009G044900--Sobic009G030300 Sobic002G089900 Sobic002G089900 Sobic009G044900--Sobic002G089900 Sobic006G248500 Sobic006G248500 Sobic009G044900--Sobic006G248500 Sobic009G044900--Sobic003G433500 Sobic002G177400 Sobic002G177400 Sobic009G044900--Sobic002G177400 Sobic004G347100 Sobic004G347100 Sobic009G044900--Sobic004G347100 Sobic001G469800 Sobic001G469800 Sobic009G044900--Sobic001G469800 Sobic009G044900--Sobic002G362300 Sobic004G013600 Sobic004G013600 Sobic009G044900--Sobic004G013600 Sobic003G074000--Sobic010G269600 Sobic002G272800 Sobic002G272800 Sobic003G074000--Sobic002G272800 Sobic005G162600 Sobic005G162600 Sobic003G074000--Sobic005G162600 Sobic001G309100 Sobic001G309100 Sobic003G074000--Sobic001G309100 Sobic003G074000--Sobic002G362300 Sobic003G074000--Sobic003G359300 Sobic007G063200 Sobic007G063200 Sobic003G074000--Sobic007G063200 Sobic003G437500 Sobic003G437500 Sobic003G074000--Sobic003G437500 Sobic003G074000--Sobic002G095700 Sobic005G009200--Sobic002G362300 Sobic005G009200--Sobic003G442000 Sobic005G009200--Sobic001G371000 Sobic008G129700 Sobic008G129700 Sobic005G009200--Sobic008G129700 Sobic008G117200 Sobic008G117200 Sobic005G009200--Sobic008G117200 Sobic009G151200 Sobic009G151200 Sobic005G009200--Sobic009G151200 Sobic002G259800 Sobic002G259800 Sobic005G009200--Sobic002G259800 Sobic002G421700 Sobic002G421700 Sobic005G009200--Sobic002G421700 Sobic005G009200--Sobic008G034600 Sobic004G211400--Sobic008G034600 Sobic009G022200 Sobic009G022200 Sobic004G211400--Sobic009G022200 Sobic007G205800 Sobic007G205800 Sobic004G211400--Sobic007G205800 Sobic004G211400--Sobic002G157200 Sobic004G211400--Sobic007G224900 Sobic006G191400 Sobic006G191400 Sobic004G211400--Sobic006G191400 Sobic003G258400 Sobic003G258400 Sobic004G211400--Sobic003G258400 Sobic008G136200 Sobic008G136200 Sobic004G211400--Sobic008G136200 Sobic004G211400--Sobic001G428400 Sobic002G157200--Sobic008G034600 Sobic002G157200--Sobic007G224900 Sobic002G157200--Sobic004G211400 Sobic001G045700 Sobic001G045700 Sobic002G157200--Sobic001G045700 Sobic006G210200 Sobic006G210200 Sobic002G157200--Sobic006G210200 Sobic002G049000 Sobic002G049000 Sobic002G157200--Sobic002G049000 Sobic002G157200--Sobic009G022200 Sobic002G157200--Sobic002G421700 Sobic002G061400 Sobic002G061400 Sobic002G157200--Sobic002G061400 Sobic004G088400 Sobic004G088400 Sobic007G130300--Sobic004G088400 Sobic007G008800 Sobic007G008800 Sobic007G130300--Sobic007G008800 Sobic003G026300 Sobic003G026300 Sobic007G130300--Sobic003G026300 Sobic007G130300--Sobic002G177400 Sobic007G130300--Sobic010G269600 Sobic007G130300--Sobic002G362300 Sobic007G130300--Sobic009G030300 Sobic003G346000 Sobic003G346000 Sobic007G130300--Sobic003G346000 Sobic007G130300--Sobic007G063200
Octagon: transcription factors


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