Gene annotation
Transcriptome id Sobic.002G157200.1
Synonym Sb02g019600
Functional annotation expressed protein
UniProt C5X8B3
Pfam -
Panther DB PTHR34572 PTHR34572:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22320 : -
RAP-DB (Rice) LOC_Os09g11240.1 : expressed protein
MaizeGDB (Corn) Zm00025a013647
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G157200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.007G224900 RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
3 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
4 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
6 Sobic.002G049000 frigida, putative, expressed -
7 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
8 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
9 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
10 Sobic.002G151600 R-interacting factor 1, putative, expressed -
11 Sobic.004G077000 expressed protein -
12 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
13 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
14 Sobic.002G177400 expressed protein -
15 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.001G428000 uncharacterized TPR repeat-containing protein, putative, expressed -
17 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
19 Sobic.007G195400 FHA domain containing protein, putative, expressed -
20 Sobic.002G058300 ES43 protein, putative, expressed -


Gene co-expression network
sample Sobic002G157200 Sobic002G157200 Sobic008G034600 Sobic008G034600 Sobic002G157200--Sobic008G034600 Sobic007G224900 Sobic007G224900 Sobic002G157200--Sobic007G224900 Sobic004G211400 Sobic004G211400 Sobic002G157200--Sobic004G211400 Sobic001G045700 Sobic001G045700 Sobic002G157200--Sobic001G045700 Sobic006G210200 Sobic006G210200 Sobic002G157200--Sobic006G210200 Sobic002G049000 Sobic002G049000 Sobic002G157200--Sobic002G049000 Sobic009G022200 Sobic009G022200 Sobic002G157200--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic002G157200--Sobic002G421700 Sobic002G061400 Sobic002G061400 Sobic002G157200--Sobic002G061400 Sobic007G205800 Sobic007G205800 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic007G224900--Sobic008G034600 Sobic007G224900--Sobic002G157200 Sobic007G224900--Sobic001G045700 Sobic001G179000 Sobic001G179000 Sobic007G224900--Sobic001G179000 Sobic007G224900--Sobic004G211400 Sobic009G059600 Sobic009G059600 Sobic007G224900--Sobic009G059600 Sobic007G224900--Sobic008G117200 Sobic007G224900--Sobic002G049000 Sobic007G224900--Sobic009G022200 Sobic004G211400--Sobic008G034600 Sobic004G211400--Sobic009G022200 Sobic004G211400--Sobic007G205800 Sobic004G211400--Sobic002G157200 Sobic004G211400--Sobic007G224900 Sobic006G191400 Sobic006G191400 Sobic004G211400--Sobic006G191400 Sobic003G258400 Sobic003G258400 Sobic004G211400--Sobic003G258400 Sobic008G136200 Sobic008G136200 Sobic004G211400--Sobic008G136200 Sobic001G428400 Sobic001G428400 Sobic004G211400--Sobic001G428400 Sobic001G045700--Sobic002G157200 Sobic001G045700--Sobic007G224900 Sobic003G185250 Sobic003G185250 Sobic001G045700--Sobic003G185250 Sobic006G006500 Sobic006G006500 Sobic001G045700--Sobic006G006500 Sobic001G045700--Sobic002G049000 Sobic002G060450 Sobic002G060450 Sobic001G045700--Sobic002G060450 Sobic002G050500 Sobic002G050500 Sobic001G045700--Sobic002G050500 Sobic002G297800 Sobic002G297800 Sobic001G045700--Sobic002G297800 Sobic010G208500 Sobic010G208500 Sobic001G045700--Sobic010G208500 Sobic006G210200--Sobic002G050500 Sobic001G454301 Sobic001G454301 Sobic006G210200--Sobic001G454301 Sobic002G151600 Sobic002G151600 Sobic006G210200--Sobic002G151600 Sobic003G023400 Sobic003G023400 Sobic006G210200--Sobic003G023400 Sobic006G210200--Sobic002G157200 Sobic006G210200--Sobic003G185250 Sobic006G210200--Sobic002G060450 Sobic001G303675 Sobic001G303675 Sobic006G210200--Sobic001G303675 Sobic009G239351 Sobic009G239351 Sobic006G210200--Sobic009G239351 Sobic002G049000--Sobic003G346000 Sobic002G049000--Sobic002G297800 Sobic002G090400 Sobic002G090400 Sobic002G049000--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic002G049000--Sobic008G068800 Sobic002G049000--Sobic007G011400 Sobic002G049000--Sobic002G061400 Sobic001G094000 Sobic001G094000 Sobic002G049000--Sobic001G094000 Sobic002G049000--Sobic008G034600 Sobic001G394400 Sobic001G394400 Sobic002G049000--Sobic001G394400 Sobic009G022200--Sobic007G011400 Sobic009G022200--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic009G022200--Sobic003G093600 Sobic009G022200--Sobic008G034600 Sobic009G022200--Sobic004G211400 Sobic009G087800 Sobic009G087800 Sobic009G022200--Sobic009G087800 Sobic009G022200--Sobic004G271900 Sobic008G116500 Sobic008G116500 Sobic009G022200--Sobic008G116500 Sobic009G022200--Sobic003G258400 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic002G421700--Sobic001G454301 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic008G129700 Sobic008G129700 Sobic002G421700--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G421700--Sobic007G116400 Sobic002G421700--Sobic001G094000 Sobic006G217200 Sobic006G217200 Sobic002G421700--Sobic006G217200 Sobic002G061400--Sobic008G129700 Sobic003G336800 Sobic003G336800 Sobic002G061400--Sobic003G336800 Sobic002G061400--Sobic002G421700 Sobic010G199800 Sobic010G199800 Sobic002G061400--Sobic010G199800 Sobic002G061400--Sobic008G034600 Sobic002G061400--Sobic008G116500 Sobic002G061400--Sobic002G297800 Sobic002G061400--Sobic002G049000 Sobic002G061400--Sobic008G117200
Octagon: transcription factors


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