Gene annotation
Transcriptome id Sobic.001G309100.1
Synonym
Functional annotation zinc knuckle domain containing protein, expressed
UniProt C5WTH7
Pfam PF14392 PF00098
Panther DB PTHR23002 PTHR23002:SF65
NCBI CDD -
KEGG Orthology K09250; cellular nucleic acid-binding protein
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G75560 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os10g39820.1 : zinc knuckle domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003229 , Zm00025a052280
Brachypodium KQJ97668 , KQJ97669 , KQJ97663 , KQJ97666 , KQJ97667 , KQJ97664 , KQJ97665 , KQJ97670
Barley HORVU1Hr1G052910.13 , HORVU1Hr1G052910.14 , HORVU1Hr1G052910.15 , HORVU1Hr1G052910.16 , HORVU1Hr1G052910.10 , HORVU1Hr1G052910.11 , HORVU1Hr1G052910.12 , HORVU1Hr1G052910.9 , HORVU1Hr1G052910.3 , HORVU1Hr1G052910.8 , HORVU1Hr1G052910.6 , HORVU1Hr1G052910.7 , HORVU1Hr1G052910.4 , HORVU1Hr1G052910.5 , HORVU1Hr1G052910.2 , HORVU1Hr1G052910.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G309100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
3 Sobic.003G101300 expressed protein -
4 Sobic.003G189900 expressed protein -
5 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
6 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
7 Sobic.003G437500 syntaxin 6, putative, expressed -
8 Sobic.001G350501 - K11253: histone H3
9 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
11 Sobic.003G420700 expressed protein -
12 Sobic.003G311000 histone-lysine N-methyltransferase SUVR3, putative, expressed -
13 Sobic.007G205000 zinc finger family protein, putative, expressed -
14 Sobic.007G088900 expressed protein -
15 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
16 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
17 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
18 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
19 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
20 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10


Gene co-expression network
sample Sobic001G309100 Sobic001G309100 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G309100--Sobic010G071200 Sobic003G437500 Sobic003G437500 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic009G036900 Sobic009G036900 Sobic003G024800--Sobic009G036900 Sobic004G349100 Sobic004G349100 Sobic003G024800--Sobic004G349100 Sobic003G024800--Sobic001G309100 Sobic009G034400 Sobic009G034400 Sobic003G024800--Sobic009G034400 Sobic003G024800--Sobic001G350501 Sobic007G063200 Sobic007G063200 Sobic003G024800--Sobic007G063200 Sobic003G024800--Sobic010G071200 Sobic008G142700 Sobic008G142700 Sobic003G024800--Sobic008G142700 Sobic010G228600 Sobic010G228600 Sobic003G024800--Sobic010G228600 Sobic003G101300--Sobic001G309100 Sobic010G211300 Sobic010G211300 Sobic003G101300--Sobic010G211300 Sobic003G101300--Sobic009G034400 Sobic001G028400 Sobic001G028400 Sobic003G101300--Sobic001G028400 Sobic003G101300--Sobic010G071200 Sobic003G101300--Sobic004G349100 Sobic003G101300--Sobic003G024800 Sobic003G101300--Sobic009G036900 Sobic001G424500 Sobic001G424500 Sobic003G101300--Sobic001G424500 Sobic003G189900--Sobic001G390500 Sobic003G189900--Sobic001G309100 Sobic008G108500 Sobic008G108500 Sobic003G189900--Sobic008G108500 Sobic007G038800 Sobic007G038800 Sobic003G189900--Sobic007G038800 Sobic002G176400 Sobic002G176400 Sobic003G189900--Sobic002G176400 Sobic003G311000 Sobic003G311000 Sobic003G189900--Sobic003G311000 Sobic001G083600 Sobic001G083600 Sobic003G189900--Sobic001G083600 Sobic006G002500 Sobic006G002500 Sobic003G189900--Sobic006G002500 Sobic003G189900--Sobic010G071200 Sobic001G390500--Sobic001G083600 Sobic003G248500 Sobic003G248500 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic004G263900 Sobic004G263900 Sobic001G390500--Sobic004G263900 Sobic001G390500--Sobic003G189900 Sobic010G174800 Sobic010G174800 Sobic001G390500--Sobic010G174800 Sobic001G390500--Sobic010G071200 Sobic002G084300 Sobic002G084300 Sobic001G390500--Sobic002G084300 Sobic010G071200--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic010G071200--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic010G071200--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic010G071200--Sobic006G257900 Sobic010G071200--Sobic001G083600 Sobic003G437500--Sobic001G028400 Sobic001G056200 Sobic001G056200 Sobic003G437500--Sobic001G056200 Sobic006G088100 Sobic006G088100 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic004G013600 Sobic004G013600 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic003G437500--Sobic003G359300 Sobic001G350501--Sobic003G024800 Sobic001G350501--Sobic004G349100 Sobic001G350501--Sobic001G309100 Sobic010G193800 Sobic010G193800 Sobic001G350501--Sobic010G193800 Sobic001G350501--Sobic008G142700 Sobic001G350501--Sobic009G034400 Sobic001G350501--Sobic003G420700 Sobic001G350501--Sobic009G036900 Sobic001G350501--Sobic007G063200 Sobic007G117100--Sobic001G038100 Sobic003G433500 Sobic003G433500 Sobic007G117100--Sobic003G433500 Sobic003G132700 Sobic003G132700 Sobic007G117100--Sobic003G132700 Sobic007G117100--Sobic006G120800 Sobic007G117100--Sobic001G507400 Sobic007G117100--Sobic001G309100 Sobic003G354100 Sobic003G354100 Sobic007G117100--Sobic003G354100 Sobic002G014700 Sobic002G014700 Sobic007G117100--Sobic002G014700 Sobic002G089900 Sobic002G089900 Sobic007G117100--Sobic002G089900
Octagon: transcription factors


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