Gene annotation
Transcriptome id Sobic.003G101300.1,Sobic.003G101300.2
Synonym Sb03g008480
Functional annotation expressed protein
UniProt A0A1W0VWM6 , C5XEY2
Pfam -
Panther DB PTHR12346 PTHR12346:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G24190 : SIN3-like 3,SIN3-like 4
RAP-DB (Rice) LOC_Os01g01970.1,LOC_Os01g01970.2 : expressed protein
MaizeGDB (Corn) Zm00025a035430 , Zm00025a023759
Brachypodium KQK02337 , KQK02338 , PNT69816
Barley -
Wheat TraesCSU02G039800 , TraesCSU02G039800 , TraesCS3B02G005800
Populus -


JBrowse

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cDNA sequences
Sobic.003G101300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
2 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
3 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
4 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
5 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
6 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
7 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
8 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
9 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
10 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
11 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
12 Sobic.003G437500 syntaxin 6, putative, expressed -
13 Sobic.001G127400 yippee zinc-binding protein, putative, expressed -
14 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
15 Sobic.003G420700 expressed protein -
16 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
17 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
18 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
19 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
20 Sobic.001G056200 expressed protein -


Gene co-expression network
sample Sobic003G101300 Sobic003G101300 Sobic001G309100 Sobic001G309100 Sobic003G101300--Sobic001G309100 Sobic010G211300 Sobic010G211300 Sobic003G101300--Sobic010G211300 Sobic009G034400 Sobic009G034400 Sobic003G101300--Sobic009G034400 Sobic001G028400 Sobic001G028400 Sobic003G101300--Sobic001G028400 Sobic010G071200 Sobic010G071200 Sobic003G101300--Sobic010G071200 Sobic004G349100 Sobic004G349100 Sobic003G101300--Sobic004G349100 Sobic003G024800 Sobic003G024800 Sobic003G101300--Sobic003G024800 Sobic009G036900 Sobic009G036900 Sobic003G101300--Sobic009G036900 Sobic001G424500 Sobic001G424500 Sobic003G101300--Sobic001G424500 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic001G309100--Sobic003G024800 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic001G309100--Sobic010G071200 Sobic003G437500 Sobic003G437500 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic010G211300--Sobic001G028400 Sobic004G013600 Sobic004G013600 Sobic010G211300--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic010G211300--Sobic006G267300 Sobic001G056200 Sobic001G056200 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G033400 Sobic010G033400 Sobic010G211300--Sobic010G033400 Sobic002G084300 Sobic002G084300 Sobic010G211300--Sobic002G084300 Sobic010G211300--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic010G211300--Sobic005G000800 Sobic009G034400--Sobic009G036900 Sobic009G034400--Sobic003G024800 Sobic004G122000 Sobic004G122000 Sobic009G034400--Sobic004G122000 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic009G034400--Sobic001G309100 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic001G028400--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic001G028400--Sobic010G211300 Sobic010G055500 Sobic010G055500 Sobic010G071200--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic010G071200--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic008G142700 Sobic008G142700 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic010G071200--Sobic001G083600 Sobic004G349100--Sobic003G024800 Sobic004G349100--Sobic001G350501 Sobic001G179000 Sobic001G179000 Sobic004G349100--Sobic001G179000 Sobic004G349100--Sobic009G034400 Sobic004G349100--Sobic001G309100 Sobic004G349100--Sobic003G101300 Sobic004G349100--Sobic003G437500 Sobic004G349100--Sobic005G000800 Sobic007G195400 Sobic007G195400 Sobic004G349100--Sobic007G195400 Sobic003G024800--Sobic009G036900 Sobic003G024800--Sobic004G349100 Sobic003G024800--Sobic001G309100 Sobic003G024800--Sobic009G034400 Sobic003G024800--Sobic001G350501 Sobic003G024800--Sobic007G063200 Sobic003G024800--Sobic010G071200 Sobic003G024800--Sobic008G142700 Sobic003G024800--Sobic010G228600 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic009G036900--Sobic010G071200 Sobic009G036900--Sobic001G424500 Sobic001G424500--Sobic009G036900 Sobic001G424500--Sobic009G034400 Sobic001G127400 Sobic001G127400 Sobic001G424500--Sobic001G127400 Sobic001G424500--Sobic003G101300 Sobic001G424500--Sobic003G024800 Sobic007G038800 Sobic007G038800 Sobic001G424500--Sobic007G038800 Sobic001G424500--Sobic004G122000 Sobic001G424500--Sobic002G068300 Sobic002G121000 Sobic002G121000 Sobic001G424500--Sobic002G121000
Octagon: transcription factors


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