Gene annotation
Transcriptome id Sobic.007G126200.1,Sobic.007G126200.2
Synonym YLS8, Sb07g020280
Functional annotation mitosis protein dim1, putative, expressed
UniProt Q0H638 , C5YKW0 , A0A1W0VS08
Pfam PF00085 PF02966
Panther DB PTHR12052 PTHR12052 PTHR12052:SF6
NCBI CDD KOG3414; Component of the U4/U6.U5 snRNP/mitosis protein DIM1
KEGG Orthology K12859; TXNL4A, U5 snRNP protein, DIM1 family
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome GO:0005681spliceosomal complex GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT5G08290 : mRNA splicing factor, thioredoxin-like U5 snRNP
RAP-DB (Rice) LOC_Os07g10256.1 : mitosis protein dim1, putative, expressed
MaizeGDB (Corn) Zm00025a006090
Brachypodium KQK05475 , PNT62205 , KQJ85424 , KQK11756 , KQJ85430 , KQK10108 , KQK11598
Barley HORVU1Hr1G077470.1 , HORVU1Hr1G077470.2 , HORVU1Hr1G077470.4 , HORVU1Hr1G077470.5 , HORVU1Hr1G077470.6 , HORVU1Hr1G077470.7 , HORVU1Hr1G077470.8 , HORVU1Hr1G077470.9 , HORVU1Hr1G077470.10 , HORVU1Hr1G077470.11 , HORVU1Hr1G042920.1
Wheat TraesCS1D02G332500 , TraesCS1D02G158700 , TraesCS2A02G593800 , TraesCS1B02G178500 , TraesCS1A02G161900 , TraesCS2B02G590800 , TraesCS1B02G343700 , TraesCS1A02G330100 , TraesCS2D02G560900
Populus -


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cDNA sequences
Sobic.007G126200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
2 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
3 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
4 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
5 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
6 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
7 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
9 Sobic.001G350501 - K11253: histone H3
10 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.001G253600 expressed protein -
12 Sobic.003G101300 expressed protein -
13 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
14 Sobic.010G237000 coiled-coil domain-containing protein 72, putative, expressed -
15 Sobic.010G228600 LSM domain containing protein, expressed -
16 Sobic.010G144400 glycosyltransferase, putative, expressed -
17 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
18 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
19 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
20 Sobic.008G106800 isoflavone reductase, putative, expressed -


Gene co-expression network
sample Sobic007G126200 Sobic007G126200 Sobic001G149700 Sobic001G149700 Sobic007G126200--Sobic001G149700 Sobic010G071200 Sobic010G071200 Sobic007G126200--Sobic010G071200 Sobic009G036900 Sobic009G036900 Sobic007G126200--Sobic009G036900 Sobic003G273100 Sobic003G273100 Sobic007G126200--Sobic003G273100 Sobic004G231400 Sobic004G231400 Sobic007G126200--Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic007G126200--Sobic010G055500 Sobic003G116700 Sobic003G116700 Sobic007G126200--Sobic003G116700 Sobic002G068300 Sobic002G068300 Sobic007G126200--Sobic002G068300 Sobic001G350501 Sobic001G350501 Sobic007G126200--Sobic001G350501 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G478300 Sobic001G478300 Sobic001G149700--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic009G036900--Sobic002G068300 Sobic009G034400 Sobic009G034400 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic003G024800 Sobic003G024800 Sobic009G036900--Sobic003G024800 Sobic010G228600 Sobic010G228600 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic009G036900--Sobic010G071200 Sobic001G424500 Sobic001G424500 Sobic009G036900--Sobic001G424500 Sobic001G371300 Sobic001G371300 Sobic003G273100--Sobic001G371300 Sobic003G273100--Sobic001G149700 Sobic003G273100--Sobic001G478300 Sobic004G274700 Sobic004G274700 Sobic003G273100--Sobic004G274700 Sobic002G291300 Sobic002G291300 Sobic003G273100--Sobic002G291300 Sobic001G427800 Sobic001G427800 Sobic003G273100--Sobic001G427800 Sobic003G273100--Sobic004G231400 Sobic003G273100--Sobic007G126200 Sobic004G079100 Sobic004G079100 Sobic003G273100--Sobic004G079100 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic006G209500 Sobic006G209500 Sobic004G231400--Sobic006G209500 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic010G055500--Sobic004G150400 Sobic001G206000 Sobic001G206000 Sobic003G116700--Sobic001G206000 Sobic003G116700--Sobic001G149700 Sobic001G441600 Sobic001G441600 Sobic003G116700--Sobic001G441600 Sobic007G079700 Sobic007G079700 Sobic003G116700--Sobic007G079700 Sobic004G014000 Sobic004G014000 Sobic003G116700--Sobic004G014000 Sobic003G116700--Sobic007G126200 Sobic009G065000 Sobic009G065000 Sobic003G116700--Sobic009G065000 Sobic003G116700--Sobic010G055500 Sobic001G078500 Sobic001G078500 Sobic003G116700--Sobic001G078500 Sobic002G068300--Sobic009G036900 Sobic002G068300--Sobic010G228600 Sobic009G016201 Sobic009G016201 Sobic002G068300--Sobic009G016201 Sobic002G068300--Sobic006G256500 Sobic010G144400 Sobic010G144400 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic001G350501--Sobic003G024800 Sobic004G349100 Sobic004G349100 Sobic001G350501--Sobic004G349100 Sobic001G309100 Sobic001G309100 Sobic001G350501--Sobic001G309100 Sobic010G193800 Sobic010G193800 Sobic001G350501--Sobic010G193800 Sobic001G350501--Sobic008G142700 Sobic001G350501--Sobic009G034400 Sobic003G420700 Sobic003G420700 Sobic001G350501--Sobic003G420700 Sobic001G350501--Sobic009G036900 Sobic007G063200 Sobic007G063200 Sobic001G350501--Sobic007G063200
Octagon: transcription factors


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