Gene annotation
Transcriptome id Sobic.003G273100.1
Synonym ZIG1, SGR4, ATVTI11, VTI11, ZIG, VTI1A, Sb03g032510, ATVTI1A
Functional annotation vesicle transport v-SNARE protein, putative, expressed
UniProt C5XHN3
Pfam PF12352 PF05008
Panther DB PTHR21230 PTHR21230:SF33
NCBI CDD KOG1666; V-SNARE
KEGG Orthology K08493; vesicle transport through interaction with t-SNAREs 1
Gene Ontology GO:0016020; membrane GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G26670 : Vesicle transport v-SNARE family protein
RAP-DB (Rice) LOC_Os01g51120.1 : vesicle transport v-SNARE protein, putative, expressed
MaizeGDB (Corn) Zm00025a038930 , Zm00025a027842
Brachypodium KQK09407 , KQK09408
Barley HORVU3Hr1G066580.1 , HORVU3Hr1G066580.2 , HORVU3Hr1G066580.3
Wheat TraesCS3A02G252300 , TraesCS1A02G363100 , TraesCS1B02G380400 , TraesCS3B02G283800 , TraesCS3D02G252800
Populus -


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cDNA sequences
Sobic.003G273100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
2 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
3 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
4 Sobic.004G274700 SNARE associated Golgi protein, putative, expressed -
5 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
6 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
7 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
8 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
9 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
10 Sobic.003G137400 OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
11 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
12 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
13 Sobic.001G471900 C2 domain containing protein, putative, expressed -
14 Sobic.008G106800 isoflavone reductase, putative, expressed -
15 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
16 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
17 Sobic.001G169700 ZOS3-14 - C2H2 zinc finger protein, expressed -
18 Sobic.004G298300 ELMO/CED-12 family protein, putative, expressed -
19 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
20 Sobic.001G054200 green ripe-like, putative, expressed -


Gene co-expression network
sample Sobic003G273100 Sobic003G273100 Sobic001G371300 Sobic001G371300 Sobic003G273100--Sobic001G371300 Sobic001G149700 Sobic001G149700 Sobic003G273100--Sobic001G149700 Sobic001G478300 Sobic001G478300 Sobic003G273100--Sobic001G478300 Sobic004G274700 Sobic004G274700 Sobic003G273100--Sobic004G274700 Sobic002G291300 Sobic002G291300 Sobic003G273100--Sobic002G291300 Sobic001G427800 Sobic001G427800 Sobic003G273100--Sobic001G427800 Sobic004G231400 Sobic004G231400 Sobic003G273100--Sobic004G231400 Sobic007G126200 Sobic007G126200 Sobic003G273100--Sobic007G126200 Sobic004G079100 Sobic004G079100 Sobic003G273100--Sobic004G079100 Sobic001G371300--Sobic003G273100 Sobic001G371300--Sobic002G291300 Sobic001G371300--Sobic001G478300 Sobic001G371300--Sobic004G274700 Sobic001G371300--Sobic001G427800 Sobic001G371300--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic001G371300--Sobic010G083700 Sobic001G056700 Sobic001G056700 Sobic001G371300--Sobic001G056700 Sobic001G371300--Sobic001G149700 Sobic010G071200 Sobic010G071200 Sobic001G149700--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic001G478300--Sobic004G274700 Sobic004G274700--Sobic001G478300 Sobic004G274700--Sobic004G231400 Sobic004G274700--Sobic001G371300 Sobic004G274700--Sobic003G273100 Sobic004G274700--Sobic001G149700 Sobic004G274700--Sobic006G209500 Sobic004G274700--Sobic010G071200 Sobic004G274700--Sobic006G257900 Sobic003G137400 Sobic003G137400 Sobic004G274700--Sobic003G137400 Sobic002G291300--Sobic001G371300 Sobic002G291300--Sobic001G056700 Sobic002G291300--Sobic003G273100 Sobic002G291300--Sobic001G427800 Sobic001G230700 Sobic001G230700 Sobic002G291300--Sobic001G230700 Sobic001G471900 Sobic001G471900 Sobic002G291300--Sobic001G471900 Sobic007G126100 Sobic007G126100 Sobic002G291300--Sobic007G126100 Sobic002G291300--Sobic001G478300 Sobic004G164500 Sobic004G164500 Sobic002G291300--Sobic004G164500 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G427800--Sobic001G371300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic004G231400--Sobic006G209500 Sobic007G126200--Sobic001G149700 Sobic007G126200--Sobic010G071200 Sobic009G036900 Sobic009G036900 Sobic007G126200--Sobic009G036900 Sobic007G126200--Sobic003G273100 Sobic007G126200--Sobic004G231400 Sobic007G126200--Sobic010G055500 Sobic003G116700 Sobic003G116700 Sobic007G126200--Sobic003G116700 Sobic002G068300 Sobic002G068300 Sobic007G126200--Sobic002G068300 Sobic001G350501 Sobic001G350501 Sobic007G126200--Sobic001G350501 Sobic004G293700 Sobic004G293700 Sobic004G079100--Sobic004G293700 Sobic001G138300 Sobic001G138300 Sobic004G079100--Sobic001G138300 Sobic001G054200 Sobic001G054200 Sobic004G079100--Sobic001G054200 Sobic004G079100--Sobic010G083700 Sobic003G115800 Sobic003G115800 Sobic004G079100--Sobic003G115800 Sobic007G186300 Sobic007G186300 Sobic004G079100--Sobic007G186300 Sobic009G246950 Sobic009G246950 Sobic004G079100--Sobic009G246950 Sobic009G171700 Sobic009G171700 Sobic004G079100--Sobic009G171700 Sobic004G079100--Sobic001G371300
Octagon: transcription factors


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