Gene annotation
Transcriptome id Sobic.003G137400.2
Synonym RCI2A, Sb03g011700
Functional annotation OsRCI2-6 - Hydrophobic protein LTI6B, expressed
UniProt A0A1B6Q310
Pfam PF01679
Panther DB PTHR21659 PTHR21659:SF24
NCBI CDD KOG1773; Stress responsive protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G05880 : Low temperature and salt responsive protein family
RAP-DB (Rice) LOC_Os05g04700.1 : OsRCI2-6 - Hydrophobic protein LTI6B, expressed
MaizeGDB (Corn) -
Brachypodium KQK04001
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
2 Sobic.008G106800 isoflavone reductase, putative, expressed -
3 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
4 Sobic.004G274700 SNARE associated Golgi protein, putative, expressed -
5 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
6 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
7 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
8 Sobic.010G209501 - -
9 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
10 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
12 Sobic.001G281700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
13 Sobic.001G471900 C2 domain containing protein, putative, expressed -
14 Sobic.004G298300 ELMO/CED-12 family protein, putative, expressed -
15 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
16 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
18 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
19 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
20 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G137400 Sobic003G137400 Sobic003G273100 Sobic003G273100 Sobic003G137400--Sobic003G273100 Sobic008G106800 Sobic008G106800 Sobic003G137400--Sobic008G106800 Sobic004G231400 Sobic004G231400 Sobic003G137400--Sobic004G231400 Sobic004G274700 Sobic004G274700 Sobic003G137400--Sobic004G274700 Sobic001G149700 Sobic001G149700 Sobic003G137400--Sobic001G149700 Sobic001G478300 Sobic001G478300 Sobic003G137400--Sobic001G478300 Sobic006G088100 Sobic006G088100 Sobic003G137400--Sobic006G088100 Sobic010G209501 Sobic010G209501 Sobic003G137400--Sobic010G209501 Sobic005G012000 Sobic005G012000 Sobic003G137400--Sobic005G012000 Sobic001G371300 Sobic001G371300 Sobic003G273100--Sobic001G371300 Sobic003G273100--Sobic001G149700 Sobic003G273100--Sobic001G478300 Sobic003G273100--Sobic004G274700 Sobic002G291300 Sobic002G291300 Sobic003G273100--Sobic002G291300 Sobic001G427800 Sobic001G427800 Sobic003G273100--Sobic001G427800 Sobic003G273100--Sobic004G231400 Sobic007G126200 Sobic007G126200 Sobic003G273100--Sobic007G126200 Sobic004G079100 Sobic004G079100 Sobic003G273100--Sobic004G079100 Sobic004G164500 Sobic004G164500 Sobic008G106800--Sobic004G164500 Sobic001G471900 Sobic001G471900 Sobic008G106800--Sobic001G471900 Sobic001G056700 Sobic001G056700 Sobic008G106800--Sobic001G056700 Sobic009G065000 Sobic009G065000 Sobic008G106800--Sobic009G065000 Sobic008G106800--Sobic003G273100 Sobic008G106800--Sobic003G137400 Sobic001G311000 Sobic001G311000 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic001G230700 Sobic001G230700 Sobic008G106800--Sobic001G230700 Sobic010G055500 Sobic010G055500 Sobic004G231400--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G231400--Sobic004G274700 Sobic004G231400--Sobic006G088100 Sobic006G257900 Sobic006G257900 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic006G209500 Sobic006G209500 Sobic004G231400--Sobic006G209500 Sobic004G274700--Sobic001G478300 Sobic004G274700--Sobic004G231400 Sobic004G274700--Sobic001G371300 Sobic004G274700--Sobic003G273100 Sobic004G274700--Sobic001G149700 Sobic004G274700--Sobic006G209500 Sobic004G274700--Sobic010G071200 Sobic004G274700--Sobic006G257900 Sobic004G274700--Sobic003G137400 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic001G478300--Sobic004G274700 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic007G035600 Sobic007G035600 Sobic010G209501--Sobic007G035600 Sobic010G209501--Sobic003G137400 Sobic010G209501--Sobic006G088100 Sobic010G209501--Sobic006G209500 Sobic007G094801 Sobic007G094801 Sobic010G209501--Sobic007G094801 Sobic002G270300 Sobic002G270300 Sobic010G209501--Sobic002G270300 Sobic010G074500 Sobic010G074500 Sobic010G209501--Sobic010G074500 Sobic003G093600 Sobic003G093600 Sobic010G209501--Sobic003G093600 Sobic003G044900 Sobic003G044900 Sobic010G209501--Sobic003G044900 Sobic005G012000--Sobic003G044900 Sobic002G039500 Sobic002G039500 Sobic005G012000--Sobic002G039500 Sobic006G184300 Sobic006G184300 Sobic005G012000--Sobic006G184300 Sobic007G023700 Sobic007G023700 Sobic005G012000--Sobic007G023700 Sobic005G012000--Sobic003G093600 Sobic008G126200 Sobic008G126200 Sobic005G012000--Sobic008G126200 Sobic006G194150 Sobic006G194150 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic007G073400 Sobic007G073400 Sobic005G012000--Sobic007G073400
Octagon: transcription factors


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