Gene annotation
Transcriptome id Sobic.004G274700.1
Synonym Sb04g031180
Functional annotation SNARE associated Golgi protein, putative, expressed
UniProt C5Y0R3
Pfam PF09335
Panther DB PTHR12677 PTHR12677:SF29
NCBI CDD KOG3140; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17790 : SNARE associated Golgi protein family
RAP-DB (Rice) LOC_Os02g46660.1 : SNARE associated Golgi protein, putative, expressed
MaizeGDB (Corn) Zm00025a021614
Brachypodium -
Barley -
Wheat TraesCS2B02G468200 , TraesCS2B02G468200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
2 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
3 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
4 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
5 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
6 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
7 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
8 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
9 Sobic.003G137400 OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
10 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
11 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
12 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
13 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.001G333200 RING zinc finger protein-like, putative, expressed -
16 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
17 Sobic.005G167300 BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
18 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.007G026100 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein


Gene co-expression network
sample Sobic004G274700 Sobic004G274700 Sobic001G478300 Sobic001G478300 Sobic004G274700--Sobic001G478300 Sobic004G231400 Sobic004G231400 Sobic004G274700--Sobic004G231400 Sobic001G371300 Sobic001G371300 Sobic004G274700--Sobic001G371300 Sobic003G273100 Sobic003G273100 Sobic004G274700--Sobic003G273100 Sobic001G149700 Sobic001G149700 Sobic004G274700--Sobic001G149700 Sobic006G209500 Sobic006G209500 Sobic004G274700--Sobic006G209500 Sobic010G071200 Sobic010G071200 Sobic004G274700--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic004G274700--Sobic006G257900 Sobic003G137400 Sobic003G137400 Sobic004G274700--Sobic003G137400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic001G478300--Sobic004G274700 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic004G231400--Sobic006G209500 Sobic001G371300--Sobic003G273100 Sobic002G291300 Sobic002G291300 Sobic001G371300--Sobic002G291300 Sobic001G371300--Sobic001G478300 Sobic001G371300--Sobic004G274700 Sobic001G371300--Sobic001G427800 Sobic004G079100 Sobic004G079100 Sobic001G371300--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic001G371300--Sobic010G083700 Sobic001G056700 Sobic001G056700 Sobic001G371300--Sobic001G056700 Sobic001G371300--Sobic001G149700 Sobic003G273100--Sobic001G371300 Sobic003G273100--Sobic001G149700 Sobic003G273100--Sobic001G478300 Sobic003G273100--Sobic004G274700 Sobic003G273100--Sobic002G291300 Sobic003G273100--Sobic001G427800 Sobic003G273100--Sobic004G231400 Sobic007G126200 Sobic007G126200 Sobic003G273100--Sobic007G126200 Sobic003G273100--Sobic004G079100 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic006G209500--Sobic001G478300 Sobic004G271900 Sobic004G271900 Sobic006G209500--Sobic004G271900 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic009G117400 Sobic009G117400 Sobic006G209500--Sobic009G117400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic007G205800 Sobic007G205800 Sobic006G209500--Sobic007G205800 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500 Sobic003G137400--Sobic003G273100 Sobic008G106800 Sobic008G106800 Sobic003G137400--Sobic008G106800 Sobic003G137400--Sobic004G231400 Sobic003G137400--Sobic004G274700 Sobic003G137400--Sobic001G149700 Sobic003G137400--Sobic001G478300 Sobic003G137400--Sobic006G088100 Sobic010G209501 Sobic010G209501 Sobic003G137400--Sobic010G209501 Sobic005G012000 Sobic005G012000 Sobic003G137400--Sobic005G012000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.