Gene annotation
Transcriptome id Sobic.006G209500.1,Sobic.006G209500.2,Sobic.006G209500.3
Synonym Sb06g028040
Functional annotation transcription initiation factor IIE subunit beta, putative, expressed
UniProt A0A1Z5RFC2 , C5YFL7
Pfam PF02186
Panther DB PTHR12716 PTHR12716:SF8
NCBI CDD KOG3095; Transcription initiation factor IIE, beta subunit
KEGG Orthology K03137; TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter


Orthologs (automatic annotation)
TAIR AT4G20330 : Transcription initiation factor TFIIE, beta subunit
RAP-DB (Rice) LOC_Os10g25770.2 : transcription initiation factor IIE subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a028367 , Zm00025a023065 , Zm00025a009849
Brachypodium KQJ96703 , KQK23354
Barley HORVU5Hr1G110960.6 , HORVU5Hr1G110960.7 , HORVU5Hr1G110960.4 , HORVU5Hr1G110960.5 , HORVU5Hr1G110960.2 , HORVU5Hr1G110960.3 , HORVU5Hr1G110960.1
Wheat TraesCS6A02G256200 , TraesCS6B02G269200 , TraesCS6D02G237400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G209500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
2 Sobic.004G271900 RMD5 homolog A, putative, expressed -
3 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
4 Sobic.003G093600 methyltransferase, putative, expressed -
5 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
6 Sobic.009G117400 protein kinase domain containing protein, expressed -
7 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
8 Sobic.002G262600 protein kinase, putative, expressed K13436: pto-interacting protein 1
9 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
10 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
11 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
12 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
13 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
14 Sobic.003G305400 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
15 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
16 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
17 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
18 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
19 Sobic.001G347600 paramyosin, putative, expressed -
20 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family


Gene co-expression network
sample Sobic006G209500 Sobic006G209500 Sobic001G478300 Sobic001G478300 Sobic006G209500--Sobic001G478300 Sobic004G271900 Sobic004G271900 Sobic006G209500--Sobic004G271900 Sobic006G088100 Sobic006G088100 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic009G117400 Sobic009G117400 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic007G205800 Sobic007G205800 Sobic006G209500--Sobic007G205800 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic001G478300--Sobic010G071200 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G149700 Sobic001G149700 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic008G034600 Sobic008G034600 Sobic004G271900--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic004G271900--Sobic010G263800 Sobic004G271900--Sobic003G093600 Sobic004G256600 Sobic004G256600 Sobic004G271900--Sobic004G256600 Sobic007G011400 Sobic007G011400 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic007G023700 Sobic007G023700 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic002G324200--Sobic006G209500 Sobic002G324200--Sobic004G271900 Sobic002G324200--Sobic010G263800 Sobic002G324200--Sobic009G117400 Sobic002G157300 Sobic002G157300 Sobic002G324200--Sobic002G157300 Sobic002G324200--Sobic009G156000 Sobic002G324200--Sobic004G256600 Sobic008G025900 Sobic008G025900 Sobic002G324200--Sobic008G025900 Sobic002G077200 Sobic002G077200 Sobic002G324200--Sobic002G077200 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic004G057400 Sobic004G057400 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic004G119000 Sobic004G119000 Sobic004G150400--Sobic004G119000 Sobic004G150400--Sobic010G055500 Sobic004G150400--Sobic007G205800 Sobic002G272800 Sobic002G272800 Sobic004G150400--Sobic002G272800 Sobic004G150400--Sobic010G071200 Sobic001G028400 Sobic001G028400 Sobic004G150400--Sobic001G028400 Sobic004G150400--Sobic006G088100 Sobic004G150400--Sobic003G093600 Sobic006G109300 Sobic006G109300 Sobic004G150400--Sobic006G109300 Sobic001G333200 Sobic001G333200 Sobic002G262600--Sobic001G333200 Sobic002G262600--Sobic002G350300 Sobic002G262600--Sobic006G209500 Sobic004G049100 Sobic004G049100 Sobic002G262600--Sobic004G049100 Sobic006G261800 Sobic006G261800 Sobic002G262600--Sobic006G261800 Sobic002G262600--Sobic004G231400 Sobic002G262600--Sobic006G088100 Sobic004G117900 Sobic004G117900 Sobic002G262600--Sobic004G117900 Sobic007G160600 Sobic007G160600 Sobic002G262600--Sobic007G160600 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.