Gene annotation
Transcriptome id Sobic.004G271900.3,Sobic.004G271900.2
Synonym Sb04g030940
Functional annotation RMD5 homolog A, putative, expressed
UniProt C5Y0F4
Pfam PF13445 PF10607
Panther DB PTHR12170 PTHR12170:SF3
NCBI CDD KOG2817; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37880 : LisH/CRA/RING-U-box domains-containing protein
RAP-DB (Rice) LOC_Os06g38940.2 : RMD5 homolog A, putative, expressed
MaizeGDB (Corn) Zm00025a006457
Brachypodium -
Barley HORVU3Hr1G087190.1 , HORVU7Hr1G085750.4 , HORVU7Hr1G085750.5 , HORVU7Hr1G085750.2 , HORVU7Hr1G085750.3 , HORVU7Hr1G085750.1
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G271900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G117400 protein kinase domain containing protein, expressed -
2 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
3 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
4 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
5 Sobic.003G093600 methyltransferase, putative, expressed -
6 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
7 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
8 Sobic.003G258400 splicing factor-related, putative, expressed -
9 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
10 Sobic.005G187200 expressed protein -
11 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
12 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
13 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
14 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
15 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
16 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
17 Sobic.002G077200 expressed protein -
18 Sobic.003G084700 - -
19 Sobic.006G246900 expressed protein -
20 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1


Gene co-expression network
sample Sobic004G271900 Sobic004G271900 Sobic009G117400 Sobic009G117400 Sobic004G271900--Sobic009G117400 Sobic007G205800 Sobic007G205800 Sobic004G271900--Sobic007G205800 Sobic008G034600 Sobic008G034600 Sobic004G271900--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic004G271900--Sobic010G263800 Sobic003G093600 Sobic003G093600 Sobic004G271900--Sobic003G093600 Sobic004G256600 Sobic004G256600 Sobic004G271900--Sobic004G256600 Sobic007G011400 Sobic007G011400 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic004G057400 Sobic004G057400 Sobic009G117400--Sobic004G057400 Sobic006G209500 Sobic006G209500 Sobic009G117400--Sobic006G209500 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic010G263800--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic010G263800--Sobic009G117400 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic007G023700 Sobic007G023700 Sobic003G093600--Sobic007G023700 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic003G093600--Sobic009G087800 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic004G256600--Sobic003G258400 Sobic004G256600--Sobic004G271900 Sobic004G256600--Sobic010G263800 Sobic009G040700 Sobic009G040700 Sobic004G256600--Sobic009G040700 Sobic005G187200 Sobic005G187200 Sobic004G256600--Sobic005G187200 Sobic004G256600--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic004G256600--Sobic009G231300 Sobic004G256600--Sobic009G117400 Sobic004G256600--Sobic002G077200 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic007G011400--Sobic002G313300 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic003G258400--Sobic002G077200 Sobic003G258400--Sobic004G256600 Sobic003G258400--Sobic009G087800 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic003G258400--Sobic004G271900 Sobic003G258400--Sobic007G205800 Sobic003G258400--Sobic003G093600 Sobic009G110366 Sobic009G110366 Sobic003G258400--Sobic009G110366 Sobic009G117300--Sobic009G117400 Sobic009G117300--Sobic004G271900 Sobic009G225200 Sobic009G225200 Sobic009G117300--Sobic009G225200 Sobic009G117300--Sobic010G263800 Sobic009G117300--Sobic004G057400 Sobic009G117300--Sobic008G034600 Sobic009G117300--Sobic006G209500 Sobic009G117300--Sobic004G256600 Sobic009G117300--Sobic007G205800
Octagon: transcription factors


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