Gene annotation
Transcriptome id Sobic.003G258400.1,Sobic.003G258400.2
Synonym Sb03g031290
Functional annotation splicing factor-related, putative, expressed
UniProt A0A1B6Q5C6 , A0A1B6Q5C4
Pfam PF13019 PF13297 PF13019
Panther DB PTHR12786 PTHR12786:SF1
NCBI CDD KOG2827; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01000 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os01g48930.1 : splicing factor-related, putative, expressed
MaizeGDB (Corn) Zm00025a038835 , Zm00025a028028
Brachypodium KQK09206
Barley HORVU3Hr1G062980.1 , HORVU3Hr1G062980.2 , HORVU3Hr1G062980.3 , HORVU3Hr1G062980.4 , HORVU3Hr1G062980.5 , HORVU3Hr1G062980.6
Wheat TraesCS3B02G300000 , TraesCS3D02G266700 , TraesCS3A02G266500
Populus -


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cDNA sequences
Sobic.003G258400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G077200 expressed protein -
2 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
3 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
4 Sobic.009G231300 drought induced 19 protein, putative, expressed -
5 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
6 Sobic.004G271900 RMD5 homolog A, putative, expressed -
7 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
8 Sobic.003G093600 methyltransferase, putative, expressed -
9 Sobic.009G110366 - -
10 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
11 Sobic.007G023700 MA3 domain containing protein, expressed -
12 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
13 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
14 Sobic.005G121800 expressed protein -
15 Sobic.009G109450 - -
16 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
17 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
18 Sobic.002G376900 EF hand family protein, putative -
19 Sobic.005G187200 expressed protein -
20 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase


Gene co-expression network
sample Sobic003G258400 Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic003G258400--Sobic002G077200 Sobic004G256600 Sobic004G256600 Sobic003G258400--Sobic004G256600 Sobic009G087800 Sobic009G087800 Sobic003G258400--Sobic009G087800 Sobic009G231300 Sobic009G231300 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic004G271900 Sobic004G271900 Sobic003G258400--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G258400--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic003G258400--Sobic003G093600 Sobic009G110366 Sobic009G110366 Sobic003G258400--Sobic009G110366 Sobic002G313300 Sobic002G313300 Sobic002G077200--Sobic002G313300 Sobic010G263800 Sobic010G263800 Sobic002G077200--Sobic010G263800 Sobic002G077200--Sobic003G258400 Sobic002G077200--Sobic007G205800 Sobic006G009400 Sobic006G009400 Sobic002G077200--Sobic006G009400 Sobic002G077200--Sobic009G231300 Sobic001G477800 Sobic001G477800 Sobic002G077200--Sobic001G477800 Sobic005G187200 Sobic005G187200 Sobic002G077200--Sobic005G187200 Sobic001G543900 Sobic001G543900 Sobic002G077200--Sobic001G543900 Sobic004G256600--Sobic003G258400 Sobic004G256600--Sobic004G271900 Sobic004G256600--Sobic010G263800 Sobic009G040700 Sobic009G040700 Sobic004G256600--Sobic009G040700 Sobic004G256600--Sobic005G187200 Sobic004G256600--Sobic006G009400 Sobic004G256600--Sobic009G231300 Sobic009G117400 Sobic009G117400 Sobic004G256600--Sobic009G117400 Sobic004G256600--Sobic002G077200 Sobic009G087800--Sobic007G205800 Sobic009G087800--Sobic003G258400 Sobic007G011400 Sobic007G011400 Sobic009G087800--Sobic007G011400 Sobic009G087800--Sobic003G093600 Sobic009G087800--Sobic004G271900 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic005G130100 Sobic005G130100 Sobic009G231300--Sobic005G130100 Sobic009G231300--Sobic009G180200 Sobic009G109450 Sobic009G109450 Sobic009G231300--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G231300--Sobic009G078500 Sobic007G156500 Sobic007G156500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic009G231300--Sobic003G258400 Sobic004G199600 Sobic004G199600 Sobic009G231300--Sobic004G199600 Sobic010G050600 Sobic010G050600 Sobic009G231300--Sobic010G050600 Sobic009G180200--Sobic004G199600 Sobic001G363100 Sobic001G363100 Sobic009G180200--Sobic001G363100 Sobic009G180200--Sobic009G109450 Sobic009G180200--Sobic009G078500 Sobic007G023700 Sobic007G023700 Sobic009G180200--Sobic007G023700 Sobic009G180200--Sobic009G231300 Sobic009G180200--Sobic005G130100 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic008G034600 Sobic008G034600 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic004G271900--Sobic003G093600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200 Sobic003G093600--Sobic007G023700 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic003G093600--Sobic009G087800 Sobic003G093600--Sobic003G258400 Sobic003G093600--Sobic001G424700 Sobic007G073400 Sobic007G073400 Sobic009G110366--Sobic007G073400 Sobic004G020401 Sobic004G020401 Sobic009G110366--Sobic004G020401 Sobic009G110366--Sobic009G109450 Sobic009G110366--Sobic003G258400 Sobic006G196000 Sobic006G196000 Sobic009G110366--Sobic006G196000 Sobic009G110366--Sobic004G143700 Sobic004G291800 Sobic004G291800 Sobic009G110366--Sobic004G291800 Sobic009G110366--Sobic009G180200 Sobic009G110366--Sobic009G198900
Octagon: transcription factors


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