Gene annotation
Transcriptome id Sobic.009G087800.1
Synonym Sb09g008090
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt C6JRM1 , C5YV87
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF42
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology K08742; E3 ubiquitin-protein ligase SIAH2
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G61790 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os05g14860.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043224 , Zm00025a037556 , Zm00025a034326 , Zm00025a019742
Brachypodium KQK06945 , KQK03465 , PNT74621 , KQK21647 , KQK21648 , KQK21646 , PNT74620
Barley HORVU3Hr1G032110.6 , HORVU3Hr1G032110.7 , HORVU3Hr1G032110.4 , HORVU3Hr1G032110.5 , HORVU7Hr1G082100.2 , HORVU7Hr1G082100.1 , HORVU3Hr1G032110.3 , HORVU3Hr1G032110.2 , HORVU3Hr1G032110.1 , HORVU3Hr1G032110.8 , HORVU3Hr1G032110.9 , HORVU1Hr1G033130.11 , HORVU1Hr1G033130.10 , HORVU1Hr1G033130.13 , HORVU1Hr1G033130.12 , HORVU1Hr1G033130.15 , HORVU1Hr1G033130.14 , HORVU1Hr1G033130.17 , HORVU1Hr1G033130.16 , HORVU1Hr1G033130.18 , HORVU1Hr1G033130.8 , HORVU1Hr1G033130.5 , HORVU1Hr1G033130.4 , HORVU1Hr1G033130.7 , HORVU1Hr1G033130.6 , HORVU1Hr1G033130.1 , HORVU1Hr1G033130.3 , HORVU1Hr1G033130.2 , HORVU1Hr1G033130.9
Wheat TraesCS3A02G158000 , TraesCS7A02G332700 , TraesCS7B02G244800 , TraesCS2A02G129000 , TraesCS1D02G134000 , TraesCS3B02G185000 , TraesCS3D02G165600 , TraesCS7D02G340900 , TraesCS1A02G136400 , TraesCS1A02G136400 , TraesCS1B02G152800
Populus -


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cDNA sequences
Sobic.009G087800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
2 Sobic.003G258400 splicing factor-related, putative, expressed -
3 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.003G093600 methyltransferase, putative, expressed -
5 Sobic.004G271900 RMD5 homolog A, putative, expressed -
6 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
7 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
8 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
9 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
10 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
11 Sobic.005G187200 expressed protein -
12 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
13 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
14 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
15 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
16 Sobic.006G145000 disease resistance RPP13-like protein 1, putative, expressed -
17 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
18 Sobic.002G077200 expressed protein -
19 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
20 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase


Gene co-expression network
sample Sobic009G087800 Sobic009G087800 Sobic007G205800 Sobic007G205800 Sobic009G087800--Sobic007G205800 Sobic003G258400 Sobic003G258400 Sobic009G087800--Sobic003G258400 Sobic007G011400 Sobic007G011400 Sobic009G087800--Sobic007G011400 Sobic003G093600 Sobic003G093600 Sobic009G087800--Sobic003G093600 Sobic004G271900 Sobic004G271900 Sobic009G087800--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic003G258400--Sobic002G077200 Sobic004G256600 Sobic004G256600 Sobic003G258400--Sobic004G256600 Sobic003G258400--Sobic009G087800 Sobic009G231300 Sobic009G231300 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic003G258400--Sobic004G271900 Sobic003G258400--Sobic007G205800 Sobic003G258400--Sobic003G093600 Sobic009G110366 Sobic009G110366 Sobic003G258400--Sobic009G110366 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic007G023700 Sobic007G023700 Sobic003G093600--Sobic007G023700 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic003G093600--Sobic009G087800 Sobic003G093600--Sobic003G258400 Sobic003G093600--Sobic001G424700 Sobic009G117400 Sobic009G117400 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic004G271900--Sobic003G093600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic003G012500 Sobic003G012500 Sobic010G026400--Sobic003G012500 Sobic010G026400--Sobic002G157300 Sobic009G127900 Sobic009G127900 Sobic010G026400--Sobic009G127900 Sobic010G026400--Sobic006G009400 Sobic010G026400--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic010G026400--Sobic003G261300 Sobic010G026400--Sobic010G263800 Sobic005G149500 Sobic005G149500 Sobic010G026400--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G026400--Sobic003G187400 Sobic007G078000 Sobic007G078000 Sobic001G424700--Sobic007G078000 Sobic003G333600 Sobic003G333600 Sobic001G424700--Sobic003G333600 Sobic001G424700--Sobic005G149500 Sobic004G196700 Sobic004G196700 Sobic001G424700--Sobic004G196700 Sobic001G424700--Sobic003G093600 Sobic001G424700--Sobic009G087800 Sobic010G260500 Sobic010G260500 Sobic001G424700--Sobic010G260500 Sobic001G424700--Sobic007G205800 Sobic004G205600 Sobic004G205600 Sobic001G424700--Sobic004G205600 Sobic003G324000 Sobic003G324000 Sobic009G198900--Sobic003G324000 Sobic009G198900--Sobic009G087800 Sobic010G280100 Sobic010G280100 Sobic009G198900--Sobic010G280100 Sobic009G198900--Sobic003G258400 Sobic005G187200 Sobic005G187200 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G198900--Sobic009G110366 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000
Octagon: transcription factors


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