Gene annotation
Transcriptome id Sobic.003G261300.1
Synonym Sb03g031540
Functional annotation arginine/serine-rich coiled-coil protein 1, putative, expressed
UniProt C5XGU3
Pfam -
Panther DB PTHR31968 PTHR31968:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48120 : -
RAP-DB (Rice) LOC_Os01g49340.1 : arginine/serine-rich coiled-coil protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a027986
Brachypodium PNT72604
Barley HORVU3Hr1G063780.5 , HORVU3Hr1G063780.4 , HORVU3Hr1G063780.6 , HORVU3Hr1G063780.3 , HORVU3Hr1G063780.2
Wheat TraesCS3D02G263600 , TraesCS3D02G263600 , TraesCS3A02G263700 , TraesCS3B02G296900 , TraesCS3B02G296900 , TraesCS3B02G296900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
2 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
3 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.006G128800 expressed protein -
5 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
6 Sobic.003G012500 expressed protein -
7 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
8 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
9 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
10 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
11 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
12 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
13 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
14 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
15 Sobic.003G093600 methyltransferase, putative, expressed -
16 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
17 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
18 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
19 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
20 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1


Gene co-expression network
sample Sobic003G261300 Sobic003G261300 Sobic010G026400 Sobic010G026400 Sobic003G261300--Sobic010G026400 Sobic002G157300 Sobic002G157300 Sobic003G261300--Sobic002G157300 Sobic002G365100 Sobic002G365100 Sobic003G261300--Sobic002G365100 Sobic006G128800 Sobic006G128800 Sobic003G261300--Sobic006G128800 Sobic003G220200 Sobic003G220200 Sobic003G261300--Sobic003G220200 Sobic003G012500 Sobic003G012500 Sobic003G261300--Sobic003G012500 Sobic007G205800 Sobic007G205800 Sobic003G261300--Sobic007G205800 Sobic004G349900 Sobic004G349900 Sobic003G261300--Sobic004G349900 Sobic006G088100 Sobic006G088100 Sobic003G261300--Sobic006G088100 Sobic010G026400--Sobic003G012500 Sobic010G026400--Sobic002G157300 Sobic009G127900 Sobic009G127900 Sobic010G026400--Sobic009G127900 Sobic006G009400 Sobic006G009400 Sobic010G026400--Sobic006G009400 Sobic007G011400 Sobic007G011400 Sobic010G026400--Sobic007G011400 Sobic010G026400--Sobic003G261300 Sobic010G263800 Sobic010G263800 Sobic010G026400--Sobic010G263800 Sobic005G149500 Sobic005G149500 Sobic010G026400--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G026400--Sobic003G187400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic003G185200 Sobic003G185200 Sobic002G365100--Sobic003G185200 Sobic002G365100--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic002G365100--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic002G365100--Sobic003G359300 Sobic004G246700 Sobic004G246700 Sobic002G365100--Sobic004G246700 Sobic010G055500 Sobic010G055500 Sobic002G365100--Sobic010G055500 Sobic010G174800 Sobic010G174800 Sobic002G365100--Sobic010G174800 Sobic001G028400 Sobic001G028400 Sobic002G365100--Sobic001G028400 Sobic002G365100--Sobic006G128800 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G130200 Sobic006G130200 Sobic006G128800--Sobic006G130200 Sobic001G514000 Sobic001G514000 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500 Sobic007G145200 Sobic007G145200 Sobic003G220200--Sobic007G145200 Sobic003G220200--Sobic002G157300 Sobic002G157000 Sobic002G157000 Sobic003G220200--Sobic002G157000 Sobic002G320500 Sobic002G320500 Sobic003G220200--Sobic002G320500 Sobic007G137900 Sobic007G137900 Sobic003G220200--Sobic007G137900 Sobic001G251700 Sobic001G251700 Sobic003G220200--Sobic001G251700 Sobic003G220200--Sobic007G011400 Sobic003G220200--Sobic004G349900 Sobic001G107500 Sobic001G107500 Sobic003G220200--Sobic001G107500 Sobic003G012500--Sobic010G026400 Sobic003G012500--Sobic002G157300 Sobic003G012500--Sobic003G187400 Sobic003G012500--Sobic010G260500 Sobic003G012500--Sobic003G261300 Sobic003G012500--Sobic005G149500 Sobic001G446900 Sobic001G446900 Sobic003G012500--Sobic001G446900 Sobic003G012500--Sobic003G220200 Sobic003G012500--Sobic006G173100 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic004G349900--Sobic007G137900 Sobic004G349900--Sobic002G157300 Sobic004G349900--Sobic006G128800 Sobic001G206100 Sobic001G206100 Sobic004G349900--Sobic001G206100 Sobic004G349900--Sobic003G220200 Sobic004G349900--Sobic007G011400 Sobic004G349900--Sobic003G261300 Sobic008G116500 Sobic008G116500 Sobic004G349900--Sobic008G116500 Sobic004G349900--Sobic007G185900 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic006G088100--Sobic003G261300 Sobic006G209500 Sobic006G209500 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G088100--Sobic006G128800
Octagon: transcription factors


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