Gene annotation
Transcriptome id Sobic.010G260500.1
Synonym Sb10g029690
Functional annotation pre-mRNA-splicing factor syf2, putative, expressed
UniProt C5Z9E6
Pfam PF08231
Panther DB PTHR13264 PTHR13264:SF5
NCBI CDD KOG2609; Cyclin D-interacting protein GCIP
KEGG Orthology K12868; pre-mRNA-splicing factor SYF2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16860 : GCIP-interacting family protein
RAP-DB (Rice) LOC_Os06g49740.1 : pre-mRNA-splicing factor syf2, putative, expressed
MaizeGDB (Corn) Zm00025a041748 , Zm00025a018450
Brachypodium PNT73971 , KQK17509 , KQK12688
Barley -
Wheat TraesCS7A02G407000 , TraesCS7B02G307000 , TraesCS7D02G400600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G260500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
2 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
3 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
4 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
5 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
6 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
7 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
8 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
9 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
10 Sobic.003G012500 expressed protein -
11 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
12 Sobic.004G205600 bromodomain domain containing protein, expressed -
13 Sobic.004G196700 expressed protein -
14 Sobic.007G104800 expressed protein -
15 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
16 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
17 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
18 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
19 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
20 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -


Gene co-expression network
sample Sobic010G260500 Sobic010G260500 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic008G174300 Sobic008G174300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G033400 Sobic010G033400 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic004G263900 Sobic004G263900 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic008G174300--Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic008G174300--Sobic007G118200 Sobic008G174300--Sobic004G263900 Sobic009G198100 Sobic009G198100 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic004G196700 Sobic004G196700 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic007G078000--Sobic001G451000 Sobic006G082600 Sobic006G082600 Sobic007G078000--Sobic006G082600 Sobic007G185900--Sobic004G196700 Sobic007G185900--Sobic002G157300 Sobic007G185900--Sobic007G078000 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic007G185900--Sobic005G149500 Sobic007G185900--Sobic003G187400 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic004G350100 Sobic004G350100 Sobic010G033400--Sobic004G350100 Sobic001G028400 Sobic001G028400 Sobic010G033400--Sobic001G028400 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic005G167300 Sobic005G167300 Sobic001G451000--Sobic005G167300 Sobic002G115801 Sobic002G115801 Sobic001G451000--Sobic002G115801 Sobic001G451000--Sobic010G260500 Sobic002G284200 Sobic002G284200 Sobic001G451000--Sobic002G284200 Sobic001G451000--Sobic003G333600 Sobic001G451000--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic001G451000--Sobic001G439500 Sobic004G198000 Sobic004G198000 Sobic001G451000--Sobic004G198000 Sobic001G451000--Sobic004G196700 Sobic010G055500 Sobic010G055500 Sobic004G263900--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G263900--Sobic010G071200 Sobic001G056200 Sobic001G056200 Sobic004G263900--Sobic001G056200 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic007G063200 Sobic007G063200 Sobic004G263900--Sobic007G063200 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic004G263900--Sobic002G084300 Sobic005G149500--Sobic003G187400 Sobic005G149500--Sobic002G157300 Sobic009G040700 Sobic009G040700 Sobic005G149500--Sobic009G040700 Sobic005G149500--Sobic004G196700 Sobic005G149500--Sobic007G011400 Sobic006G060100 Sobic006G060100 Sobic005G149500--Sobic006G060100 Sobic005G149500--Sobic007G185900 Sobic007G137900 Sobic007G137900 Sobic005G149500--Sobic007G137900 Sobic005G149500--Sobic007G078000 Sobic003G187400--Sobic002G157300 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.