Gene annotation
| Transcriptome id | Sobic.007G078000.2,Sobic.007G078000.5,Sobic.007G078000.4,Sobic.007G078000.6 |
|---|---|
| Synonym | Sb07g006280, PIA1 |
| Functional annotation | protein phosphatase 2C, putative, expressed |
| UniProt | A0A1Z5R8J7 , A0A1Z5R9H1 , A0A1B6PGB6 |
| Pfam | PF00481 |
| Panther DB | PTHR13832 PTHR13832:SF329 |
| NCBI CDD | KOG0698; Serine/threonine protein phosphatase |
| KEGG Orthology | K17506; PPM1L, protein phosphatase 1L |
| Gene Ontology | GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity |
Orthologs (automatic annotation)
| TAIR | AT2G20630 : PP2C induced by AVRRPM1,Protein phosphatase 2C family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g52000.1 : protein phosphatase 2C, putative, expressed |
| MaizeGDB (Corn) | Zm00025a054889 |
| Brachypodium | KQJ95605 , PNT66892 |
| Barley | - |
| Wheat | TraesCS2A02G428500 , TraesCS2A02G428500 , TraesCS2D02G426600 , TraesCS2B02G449200 , TraesCS2B02G449200 , TraesCS2D02G426600 |
| Populus | - |
JBrowse
| Sobic.007G078000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G333600 | OsFBX29 - F-box domain containing protein, expressed | - |
| 2 | Sobic.004G196700 | expressed protein | - |
| 3 | Sobic.007G185900 | IBR domain containing protein, putative, expressed | K11968: ariadne-1 |
| 4 | Sobic.010G260500 | pre-mRNA-splicing factor syf2, putative, expressed | K12868: pre-mRNA-splicing factor SYF2 |
| 5 | Sobic.001G424700 | CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K08269: ULK2, serine/threonine-protein kinase ULK2 |
| 6 | Sobic.005G149500 | palmitoyltransferase TIP1, putative, expressed | K18932: palmitoyltransferase |
| 7 | Sobic.001G372700 | B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed | - |
| 8 | Sobic.001G451000 | two-component response regulator, putative, expressed | K14491: two-component response regulator ARR-B family |
| 9 | Sobic.006G082600 | OsFBX133 - F-box domain containing protein, expressed | K10295: F-box protein 9 |
| 10 | Sobic.007G037100 | MYB family transcription factor, putative, expressed | - |
| 11 | Sobic.002G313300 | bromodomain domain containing protein, expressed | - |
| 12 | Sobic.002G001600 | MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 13 | Sobic.001G543900 | H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed | K01535: PMA1, H+-transporting ATPase |
| 14 | Sobic.004G205600 | bromodomain domain containing protein, expressed | - |
| 15 | Sobic.002G284200 | peroxisomal multifunctional enzyme type 2, putative, expressed | - |
| 16 | Sobic.002G157300 | Ser/Thr protein phosphatase family protein, putative, expressed | K15423: serine/threonine-protein phosphatase 4 catalytic subunit |
| 17 | Sobic.007G137900 | nucleoside-triphosphatase, putative, expressed | K01510: ENTPD1_3_8, apyrase |
| 18 | Sobic.002G165300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | K11111: TERF2, telomeric repeat-binding factor 2 |
| 19 | Sobic.007G205800 | chaperone protein dnaJ 10, putative, expressed | - |
| 20 | Sobic.005G177800 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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