Gene annotation
Transcriptome id Sobic.005G177800.1,Sobic.005G177800.3,Sobic.005G177800.6,Sobic.005G177800.4,Sobic.005G177800.5,Sobic.005G177800.2
Synonym PYE, Sb05g023730
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6PT73 , A0A1Z5RJ47 , A0A1Z5RJ78 , C5Y5V2
Pfam -
Panther DB PTHR23042 PTHR23042:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47640 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os11g38870.1,LOC_Os11g38870.2 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029433
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G124900 MA3 domain containing protein, expressed -
2 Sobic.004G196700 expressed protein -
3 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
4 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
5 Sobic.004G031700 expressed protein -
6 Sobic.001G477800 expressed protein -
7 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
8 Sobic.002G313300 bromodomain domain containing protein, expressed -
9 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
10 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
11 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
12 Sobic.006G159900 DTA2, putative, expressed -
13 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
14 Sobic.005G130200 - -
15 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
16 Sobic.008G024600 expressed protein -
17 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
18 Sobic.006G080300 SET domain containing protein, expressed -
19 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
20 Sobic.002G343800 - -


Gene co-expression network
sample Sobic005G177800 Sobic005G177800 Sobic006G124900 Sobic006G124900 Sobic005G177800--Sobic006G124900 Sobic004G196700 Sobic004G196700 Sobic005G177800--Sobic004G196700 Sobic010G001600 Sobic010G001600 Sobic005G177800--Sobic010G001600 Sobic001G543800 Sobic001G543800 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic005G177800--Sobic001G477800 Sobic007G078000 Sobic007G078000 Sobic005G177800--Sobic007G078000 Sobic002G313300 Sobic002G313300 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic006G124900--Sobic001G477800 Sobic007G130600 Sobic007G130600 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic007G185900 Sobic007G185900 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic008G160700 Sobic008G160700 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic010G001600--Sobic002G300400 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic001G543800--Sobic010G001600 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic001G543800--Sobic006G124900 Sobic001G543800--Sobic001G194900 Sobic001G543800--Sobic004G196700 Sobic001G543800--Sobic008G024600 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic004G031700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic004G031700--Sobic001G094000 Sobic001G511500 Sobic001G511500 Sobic004G031700--Sobic001G511500 Sobic002G158700 Sobic002G158700 Sobic004G031700--Sobic002G158700 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic007G011400 Sobic007G011400 Sobic001G477800--Sobic007G011400 Sobic006G009400 Sobic006G009400 Sobic001G477800--Sobic006G009400 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic010G260500 Sobic010G260500 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic002G313300--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic002G313300--Sobic010G263800 Sobic002G313300--Sobic001G543900 Sobic002G313300--Sobic006G080300 Sobic002G313300--Sobic006G009400 Sobic002G313300--Sobic007G185900 Sobic002G313300--Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100
Octagon: transcription factors


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