Gene annotation
Transcriptome id Sobic.001G194900.3,Sobic.001G194900.2,Sobic.001G194900.1
Synonym ETFQO, Sb01g017140
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
FAD dependent oxidoreductase domain containing protein, expressed
UniProt A0A1B6QJW4 , A0A1Z5S6F2 , A0A1Z5S6H6
Pfam PF05187 PF13450 PF05187
Panther DB PTHR10617 PTHR10617:SF107
NCBI CDD -
KEGG Orthology K00311; electron-transferring-flavoprotein dehydrogenase
Gene Ontology GO:0004174; electron-transferring-flavoprotein dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT2G43400 : electron-transfer flavoprotein:ubiquinone oxidoreductase
RAP-DB (Rice) LOC_Os10g37210.1 : FAD dependent oxidoreductase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006311
Brachypodium KQJ97393
Barley HORVU1Hr1G046990.8 , HORVU1Hr1G046990.20 , HORVU1Hr1G046990.21 , HORVU1Hr1G046990.17 , HORVU1Hr1G046990.16 , HORVU1Hr1G046990.15 , HORVU1Hr1G046990.14 , HORVU1Hr1G046990.13 , HORVU1Hr1G046990.12 , HORVU1Hr1G046990.11 , HORVU1Hr1G046990.10 , HORVU1Hr1G046990.19 , HORVU1Hr1G046990.18 , HORVU1Hr1G046990.9 , HORVU1Hr1G046990.7 , HORVU1Hr1G046990.6 , HORVU1Hr1G046990.4 , HORVU1Hr1G046990.3 , HORVU1Hr1G046990.2 , HORVU1Hr1G046990.1
Wheat TraesCS1A02G176900 , TraesCS1A02G176900 , TraesCS1A02G176900 , TraesCS1B02G203500 , TraesCS1D02G162200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G194900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
2 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
3 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
4 Sobic.005G187200 expressed protein -
5 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
6 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
7 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
8 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.005G130200 - -
10 Sobic.006G124900 MA3 domain containing protein, expressed -
11 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
13 Sobic.010G019100 expressed protein -
14 Sobic.004G205600 bromodomain domain containing protein, expressed -
15 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
16 Sobic.004G196700 expressed protein -
17 Sobic.008G024600 expressed protein -
18 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
19 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
20 Sobic.002G077200 expressed protein -


Gene co-expression network
sample Sobic001G194900 Sobic001G194900 Sobic008G160700 Sobic008G160700 Sobic001G194900--Sobic008G160700 Sobic010G001600 Sobic010G001600 Sobic001G194900--Sobic010G001600 Sobic007G130600 Sobic007G130600 Sobic001G194900--Sobic007G130600 Sobic005G187200 Sobic005G187200 Sobic001G194900--Sobic005G187200 Sobic001G543800 Sobic001G543800 Sobic001G194900--Sobic001G543800 Sobic009G235900 Sobic009G235900 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic005G177800 Sobic005G177800 Sobic001G194900--Sobic005G177800 Sobic005G130200 Sobic005G130200 Sobic001G194900--Sobic005G130200 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic006G124900 Sobic006G124900 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic010G263800 Sobic010G263800 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic001G479500 Sobic001G479500 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic005G187200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic005G187200--Sobic001G194900 Sobic001G543800--Sobic010G001600 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic001G543800--Sobic006G124900 Sobic001G543800--Sobic001G194900 Sobic004G196700 Sobic004G196700 Sobic001G543800--Sobic004G196700 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic001G543800--Sobic004G256600 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic009G235900--Sobic008G160700 Sobic001G359400 Sobic001G359400 Sobic009G235900--Sobic001G359400 Sobic005G007800 Sobic005G007800 Sobic009G235900--Sobic005G007800 Sobic010G042900 Sobic010G042900 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic003G145900 Sobic003G145900 Sobic009G235900--Sobic003G145900 Sobic001G347600 Sobic001G347600 Sobic009G235900--Sobic001G347600 Sobic001G424700--Sobic007G078000 Sobic003G333600 Sobic003G333600 Sobic001G424700--Sobic003G333600 Sobic005G149500 Sobic005G149500 Sobic001G424700--Sobic005G149500 Sobic001G424700--Sobic004G196700 Sobic003G093600 Sobic003G093600 Sobic001G424700--Sobic003G093600 Sobic009G087800 Sobic009G087800 Sobic001G424700--Sobic009G087800 Sobic010G260500 Sobic010G260500 Sobic001G424700--Sobic010G260500 Sobic001G424700--Sobic007G205800 Sobic004G205600 Sobic004G205600 Sobic001G424700--Sobic004G205600 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic005G177800--Sobic001G477800 Sobic005G177800--Sobic007G078000 Sobic002G313300 Sobic002G313300 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic010G248200 Sobic010G248200 Sobic005G130200--Sobic010G248200 Sobic005G130200--Sobic001G479500 Sobic001G543900 Sobic001G543900 Sobic005G130200--Sobic001G543900 Sobic008G161401 Sobic008G161401 Sobic005G130200--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic005G130200--Sobic009G156000 Sobic002G283300 Sobic002G283300 Sobic005G130200--Sobic002G283300 Sobic004G212800 Sobic004G212800 Sobic005G130200--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic005G130200--Sobic003G057800 Sobic005G130200--Sobic001G477800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.